Evidence map›Paper›PMID 32601663›Full record

ArticleGlycobiology2021

Production of perdeuterated fucose from glyco-engineered bacteria.

Lukas Gajdos, V Trevor Forsyth, Matthew P Blakeley, Michael Haertlein, Anne Imberty, Eric Samain, Juliette M Devos

Open access · hybridAbstract read
In one paragraph

Article in Glycobiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lukas GajdosLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
V Trevor ForsythLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
Matthew P BlakeleyLarge Scale Structures Group, Institut Laue-Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
Michael HaertleinLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
Anne ImbertyUniversité Grenoble Alpes, CNRS, CERMAV, Grenoble 38000, France.
Eric SamainUniversité Grenoble Alpes, CNRS, CERMAV, Grenoble 38000, France.
Juliette M DevosLife Sciences Group, Institut Laue-Langevin, 71 Avenue des Martyrs, Grenoble 38000, France.
Institut Laue-Langevin · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

l-Fucose and l-fucose-containing polysaccharides, glycoproteins or glycolipids play an important role in a variety of biological processes. l-Fucose-containing glycoconjugates have been implicated in many diseases including cancer and rheumatoid arthritis. Interest in fucose and its derivatives is growing in cancer research, glyco-immunology, and the study of host-pathogen interactions. l-Fucose can be extracted from bacterial and algal polysaccharides or produced (bio)synthetically. While deuterated glucose and galactose are available, and are of high interest for metabolic studies and biophysical studies, deuterated fucose is not easily available. Here, we describe the production of perdeuterated l-fucose, using glyco-engineered Escherichia coli in a bioreactor with the use of a deuterium oxide-based growth medium and a deuterated carbon source. The final yield was 0.2 g L-1 of deuterated sugar, which was fully characterized by mass spectrometry and nuclear magnetic resonance spectroscopy. We anticipate that the perdeuterated fucose produced in this way will have numerous applications in structural biology where techniques such as NMR, solution neutron scattering and neutron crystallography are widely used. In the case of neutron macromolecular crystallography, the availability of perdeuterated fucose can be exploited in identifying the details of its interaction with protein receptors and notably the hydrogen bonding network around the carbohydrate binding site.

Indexed as

Escherichia coliPolysaccharidesPolysaccharidesdeuterationengineeringEscherichia colifucoseneutron scattering

Identifiers

PMID32601663
PMCPMC7874385
OpenAlexW3039215460

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.