Evidence map›Paper›PMID 32601485›Full record

ArticleNature chemical biology2020

Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel.

Ilya A Osterman, Maximiliane Wieland, Tinashe P Maviza, Kseniya A Lashkevich, Dmitrii A Lukianov, Ekaterina S Komarova, Yuliya V Zakalyukina, Robert Buschauer, Dmitrii I Shiriaev, Semen A Leyn and 14 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Review
  3. The Oxytetracycline ProducerInternational journal of molecular sciences · 2026
    Article
  4. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Characterization ofInternational journal of molecular sciences · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 4 countries.

Ilya A Osterman *Center of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia. i.osterman@skoltech.ru.ORCID http://orcid.org/0000-0001-7748-980X
Maximiliane Wieland *Institute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.ORCID http://orcid.org/0000-0002-6261-0117
Tinashe P Maviza *Center of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia.ORCID http://orcid.org/0000-0001-8676-7445
Kseniya A LashkevichDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-3098-228X
Dmitrii A LukianovCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia.
Ekaterina S KomarovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia.ORCID http://orcid.org/0000-0002-6285-6395
Yuliya V ZakalyukinaDepartment of Soil Science and Department of Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0001-8943-5761
Robert BuschauerGene Center, Department of Biochemistry, University of Munich, Munich, Germany.ORCID http://orcid.org/0000-0002-5794-4841
Dmitrii I ShiriaevDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0002-9779-1501
Semen A LeynInfectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9886-9120
Jaime E ZlamalInfectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Mikhail V BiryukovDepartment of Soil Science and Department of Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0002-5765-1221
Dmitry A SkvortsovDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Vadim N TashlitskyDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0003-4100-2419
Vladimir I PolshakovCenter for Magnetic Tomography and Spectroscopy, Faculty of Fundamental Medicine, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0002-3216-5737
Jingdong ChengGene Center, Department of Biochemistry, University of Munich, Munich, Germany.ORCID http://orcid.org/0000-0003-4442-377X
Yury S PolikanovDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-5064-0327
Alexey A BogdanovDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Andrei L OstermanInfectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Sergey E DmitrievDepartment of Chemistry, Faculty of Bioengineering and Bioinformatics and Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0002-1774-8475
Roland BeckmannGene Center, Department of Biochemistry, University of Munich, Munich, Germany.
Olga A DontsovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia.
Daniel N WilsonInstitute for Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany. Daniel.Wilson@chemie.uni-hamburg.de.ORCID http://orcid.org/0000-0003-3816-3828
Petr V SergievCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia. petya@genebee.msu.su.ORCID http://orcid.org/0000-0001-8866-1863
Lomonosov Moscow State University · RUSkolkovo Institute of Science and Technology · RULudwig-Maximilians-Universität München · DESanford Burnham Prebys Medical Discovery Institute · USUniversität Hamburg · DEUniversity of Illinois Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increase in multi-drug resistant pathogenic bacteria is making our current arsenal of clinically used antibiotics obsolete, highlighting the urgent need for new lead compounds with distinct target binding sites to avoid cross-resistance. Here we report that the aromatic polyketide antibiotic tetracenomycin (TcmX) is a potent inhibitor of protein synthesis, and does not induce DNA damage as previously thought. Despite the structural similarity to the well-known translation inhibitor tetracycline, we show that TcmX does not interact with the small ribosomal subunit, but rather binds to the large subunit, within the polypeptide exit tunnel. This previously unappreciated binding site is located adjacent to the macrolide-binding site, where TcmX stacks on the noncanonical basepair formed by U1782 and U2586 of the 23S ribosomal RNA. Although the binding site is distinct from the macrolide antibiotics, our results indicate that like macrolides, TcmX allows translation of short oligopeptides before further translation is blocked.

Indexed as

AmycolatopsisBinding SitesCryoelectron MicroscopyDrug Resistance, BacterialEscherichia coliGene Expression Regulation, BacterialHEK293 CellsHumansMicrobial Sensitivity TestsModels, MolecularMutationNaphthacenesProtein BindingProtein BiosynthesisProtein ConformationRibosomesNaphthacenestetracenomycin X

Identifiers

PMID32601485
OpenAlexW3037978936

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.