Evidence map›Paper›PMID 32601452›Full record

ArticleNature microbiology2020

Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron.

Nathan T Porter, Andrew J Hryckowian, Bryan D Merrill, Jaime J Fuentes, Jackson O Gardner, Robert W P Glowacki, Shaleni Singh, Ryan D Crawford, Evan S Snitkin, Justin L Sonnenburg and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
14.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 166 citations in OpenAlex.

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47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Nathan T Porter *Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0001-8523-6909
Andrew J Hryckowian *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. hryckowian@medicine.wisc.edu.ORCID http://orcid.org/0000-0002-8956-6259
Bryan D MerrillDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9967-5539
Jaime J FuentesDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0001-8432-9337
Jackson O GardnerDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-0179-6402
Robert W P GlowackiDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.
Shaleni SinghDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.
Ryan D CrawfordDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Evan S SnitkinDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA.
Justin L SonnenburgDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-2299-6817
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA. emartens@umich.edu.ORCID http://orcid.org/0000-0001-6681-2990
University of Michigan · USStanford University · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
Low dietary fiber and gut microbiota-induced mucus layer erosion as IBD triggersR01DK118024 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GRACE Y. CHEN, Eric C Martens · 2018 to 2026
$4.9M
Training Program in BioinformaticsT32GM070449 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID, BURMEISTER, MARGIT · 2005 to 2020
$3.6M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
How glycans shape gut microbiota function and assemblyR01GM099513 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2013 to 2016
$1.2M
Immune Regulation by Bacteroides Polysaccharide CapsulesR21AI142257 · NIAID · WASHINGTON UNIVERSITY · PI ALLEN, PAUL M, MARTENS, ERIC C · 2019 to 2020
$502k
The role of polysaccharide surface capsules in Bacteroides glycan degradationR03DK096023 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2012 to 2013
$150k
NIAID NIH HHS R21 AI142257NIAID NIH HHS T32 AI007328NIDDK NIH HHS R01 DK085025NIDDK NIH HHS R01 DK118024NIDDK NIH HHS R03 DK096023NIGMS NIH HHS R01 GM099513NIGMS NIH HHS T32 GM007544NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM070449NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

A variety of cell surface structures dictate interactions between bacteria and their environment, including their viruses (bacteriophages). Members of the human gut Bacteroidetes characteristically produce several phase-variable capsular polysaccharides (CPSs), but their contributions to bacteriophage interactions are unknown. To begin to understand how CPSs have an impact on Bacteroides-phage interactions, we isolated 71 Bacteroides thetaiotaomicron-infecting bacteriophages from two locations in the United States. Using B. thetaiotaomicron strains that express defined subsets of CPSs, we show that CPSs dictate host tropism for these phages and that expression of non-permissive CPS variants is selected under phage predation, enabling survival. In the absence of CPSs, B. thetaiotaomicron escapes bacteriophage predation by altering expression of eight distinct phase-variable lipoproteins. When constitutively expressed, one of these lipoproteins promotes resistance to multiple bacteriophages. Our results reveal important roles for Bacteroides CPSs and other cell surface structures that allow these bacteria to persist under bacteriophage predation, and hold important implications for using bacteriophages therapeutically to target gut symbionts.

Indexed as

AnimalsBacterial CapsulesBacteriophagesBacteroidesBacteroides thetaiotaomicronFemaleGerm-Free LifeHumansLipoproteinsMaleMicePolysaccharidesTranscriptomecapsular polysaccharide, Bacteroides vulgatusLipoproteinsPolysaccharides

Identifiers

PMID32601452
PMCPMC7482406
OpenAlexW3037274972

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.