Evidence map›Paper›PMID 32601450›Full record

ArticleNature nanotechnology2020

Role of nanoscale antigen organization on B-cell activation probed using DNA origami.

Rémi Veneziano, Tyson J Moyer, Matthew B Stone, Eike-Christian Wamhoff, Benjamin J Read, Sayak Mukherjee, Tyson R Shepherd, Jayajit Das, William R Schief, Darrell J Irvine and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature nanotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 196 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
196citing papers in PubMed, 1 pooled it
21.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

196 citing papers in PubMed, 1 synthesis or guideline pooled it, 433 citations in OpenAlex.

  1. Analyzing Molecular Determinants of Nanodrugs' Cytotoxic Effects.International journal of molecular sciences · 2025
    Pooled it
  2. Review
  3. Programmable DNA Assemblies Reconstitute Supramolecular Protein Function.bioRxiv : the preprint server for biology · 2026
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136 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Rémi Veneziano *Massachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-2726-3770
Tyson J Moyer *Massachusetts Institute of Technology, Koch Institute for Integrative Cancer Research, Cambridge, MA, USA.
Matthew B Stone *Massachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.
Eike-Christian WamhoffMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.
Benjamin J ReadMassachusetts Institute of Technology, Koch Institute for Integrative Cancer Research, Cambridge, MA, USA.
Sayak MukherjeeThe Ohio State University, Department of Pediatrics, Battelle Center for Mathematical Medicine, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
Tyson R ShepherdMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-7122-1917
Jayajit DasThe Ohio State University, Department of Pediatrics, Battelle Center for Mathematical Medicine, The Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.
William R SchiefCenter for HIV/AIDS Vaccine Immunology and Immunogen Discovery, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-1120-0150
Darrell J IrvineMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA. djirvine@mit.edu.ORCID http://orcid.org/0000-0002-8637-1405
Mark BatheMassachusetts Institute of Technology, Department of Biological Engineering, Cambridge, MA, USA. mark.bathe@mit.edu.ORCID http://orcid.org/0000-0002-6199-6855
Massachusetts Institute of Technology · USNationwide Children's Hospital · USScripps Research Institute · USGeorge Mason University · US

Funding

Identification of neutralizing epitopes on SARS-CoV-2 spike for design of vaccines and small-molecule antiviralsUM1AI144462 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 2019 to 2025
$201.6M
Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI CRISPIN, MAX · 2012 to 2018
$131.5M
Virology and ImmunologyP01AI048240 · NIAID · UNIVERSITY OF WASHINGTON · PI RUPRECHT, RUTH MARGRIT · 2000 to 2020
$46.7M
Simultaneous profiling of neuronal synapse activities, proteins, and messenger RNAs at the single-cell levelR01MH112694 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Mark Bathe · 2017 to 2026
$2.8M
Modeling Antibody-induced Immune Responses by NK cells in Mice and Humans (Resubmission 1)R01AI146581 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI DAS, JAYAJIT · 2020 to 2025
$2.3M
Developing a predictive in silico toolkit for modeling NK cell responses against RNA virus infectionsR01AI143740 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI DAS, JAYAJIT · 2019 to 2023
$1.5M
Structured DNA Nanoparticles Therapeutic mRNA and CRISPR/Cas9 DeliveryR21EB026008 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BATHE, MARK · 2018 to 2021
$796k
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI048240NIAID NIH HHS R01 AI143740NIAID NIH HHS R01 AI146581NIAID NIH HHS UM1 AI100663NIAID NIH HHS UM1 AI144462NIBIB NIH HHS R21 EB026008NIMH NIH HHS R01 MH112694
6 · The paper itself

Abstract

Vaccine efficacy can be increased by arraying immunogens in multivalent form on virus-like nanoparticles to enhance B-cell activation. However, the effects of antigen copy number, spacing and affinity, as well as the dimensionality and rigidity of scaffold presentation on B-cell activation remain poorly understood. Here, we display the clinical vaccine immunogen eOD-GT8, an engineered outer domain of the HIV-1 glycoprotein-120, on DNA origami nanoparticles to systematically interrogate the impact of these nanoscale parameters on B-cell activation in vitro. We find that B-cell signalling is maximized by as few as five antigens maximally spaced on the surface of a 40-nm viral-like nanoparticle. Increasing antigen spacing up to ~25-30 nm monotonically increases B-cell receptor activation. Moreover, scaffold rigidity is essential for robust B-cell triggering. These results reveal molecular vaccine design principles that may be used to drive functional B-cell responses.

Indexed as

AIDS VaccinesAnimalsAntigens, ViralB-LymphocytesCell LineDNAFemaleHIV Envelope Protein gp120Lymphocyte ActivationMiceNanostructuresNucleic Acid ConformationSignal TransductionAIDS VaccinesAntigens, ViralDNAgp120 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120

Identifiers

PMID32601450
PMCPMC7415668
OpenAlexW3037346400

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.