Evidence map›Paper›PMID 32601281›Full record

ArticleScientific reports2020

Profiling of naïve and primed human pluripotent stem cells reveals state-associated miRNAs.

Benjamin T Dodsworth, Klas Hatje, Maria Rostovskaya, Rowan Flynn, Claas A Meyer, Sally A Cowley

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
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  8. In Vitro Embryogenesis and Gastrulation Using Stem Cells in Mice and Humans.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Benjamin T DodsworthSir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford, OX1 3RE, UK.
Klas HatjeRoche Pharma Research and Early Development, Roche Innovation Center Basel, Grenzacherstrasse 124, 4070, Basel, Switzerland.ORCID http://orcid.org/0000-0001-5425-8195
Maria RostovskayaEpigenetics Programme, Babraham Institute, Cambridge, CB22 3AT, UK.
Rowan FlynnCenso Biotechnologies, Roslin Innovation Centre Charnock Bradley Building, Easter Bush Campus, Roslin, EH25 9RG, UK.
Claas A MeyerRoche Pharma Research and Early Development, Roche Innovation Center Basel, Grenzacherstrasse 124, 4070, Basel, Switzerland.
Sally A CowleySir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford, OX1 3RE, UK. sally.cowley@path.ox.ac.uk.ORCID http://orcid.org/0000-0003-0297-6675
Roche (Switzerland) · CHBabraham Institute · GBRoslin Cells (United Kingdom) · GBUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L015447/1Department of HealthMedical Research Council G0900747Medical Research Council G0900747 91070Medical Research Council G1001028Medical Research Council MC_EX_MR/N50192X/1Medical Research Council MR/L023784/1Medical Research Council MR/M024962/1Medical Research Council MR/P00072X/1Medical Research Council MR/P00072X/2Wellcome TrustWellcome Trust 090532/Z/09/ZWellcome Trust WTISSF121302
6 · The paper itself

Abstract

Naïve human pluripotent stem cells (hPSC) resemble the embryonic epiblast at an earlier time-point in development than conventional, 'primed' hPSC. We present a comprehensive miRNA profiling of naïve-to-primed transition in hPSC, a process recapitulating aspects of early in vivo embryogenesis. We identify miR-143-3p and miR-22-3p as markers of the naïve state and miR-363-5p, several members of the miR-17 family, miR-302 family as primed markers. We uncover that miR-371-373 are highly expressed in naïve hPSC. MiR-371-373 are the human homologs of the mouse miR-290 family, which are the most highly expressed miRNAs in naïve mouse PSC. This aligns with the consensus that naïve hPSC resemble mouse naive PSC, showing that the absence of miR-371-373 in conventional hPSC is due to cell state rather than a species difference.

Indexed as

Gene Expression ProfilingHumansInduced Pluripotent Stem CellsMicroRNAsPluripotent Stem CellsMicroRNAs

Identifiers

PMID32601281
PMCPMC7324611
OpenAlexW3037646588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.