ArticleBMC genomics2020
Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L).
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
33 citing papers in PubMed, 49 citations in OpenAlex.
- Proteomic insights into nano-chitosan-induced salinity tolerance in solid matrix-primed mung bean seedlings.Scientific reports · 2026Article
- BioCNTs Mediated Delivery of Systemically Mobile Small RNAs via Leaf Spray to Control Both Tomato DNA and RNA Viruses.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Article
- Genome-wide identification of peroxidase genes and functional analysis of MtPRX76 on lignin synthesis in Medicago truncatula.Functional & integrative genomics · 2025Article
- Genome-wide identification and expression analysis of the class III peroxidase gene family in Medicago sativa.BMC plant biology · 2025Article
- Deciphering the Class III Peroxidase Gene Family and Verifying Their Expression in Modulating Seed Germination in Tomato.Antioxidants (Basel, Switzerland) · 2025Article
- A combination of morphological, biochemical and structural responses is required for desiccation tolerance inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Comparative analysis of POD gene family and expression differentiation under NaCl, HBMC genomics · 2025Article
- Development of functional markers for peroxidase activity genes TaPod-7AS and TaPod-4AL in wheat.BMC genomics · 2025Article
- The Class III Peroxidase Gene Family inAntioxidants (Basel, Switzerland) · 2025Article
- Genome-wide identification and expression analysis of the class III peroxidase gene (PRXIII) family in Medicago sativa L. and its function in the abiotic stress response.BMC plant biology · 2025Article
- Article
- Integration of Genome-Wide Identification and Transcriptome Analysis of Class III Peroxidases inInternational journal of molecular sciences · 2024Article
- Molecular Characterization of Peroxidase (Genes · 2024Article
- Genome-Wide Identification, Characterization, and Expression Analysis of the MYB-R2R3 Gene Family in Black Pepper (International journal of molecular sciences · 2024Article
- The Physiological Response Mechanism of Peanut Leaves under Al Stress.Plants (Basel, Switzerland) · 2024Article
- High Concentrations of Se Inhibited the Growth of Rice Seedlings.Plants (Basel, Switzerland) · 2024Article
- Genome-Wide Identification and Expression Analysis of the Class III Peroxidase Gene Family under Abiotic Stresses in Litchi (International journal of molecular sciences · 2024Article
- Comparative analysis of POD genes and their expression under multiple hormones in Pyrus bretschenedri.BMC genomic data · 2024Article
- Genome-Wide Investigation of Class III Peroxidase Genes inPlants (Basel, Switzerland) · 2024Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 4 institutions in 2 countries.
Funding
Abstract
backgroundThe class III peroxidases (PODs) are involved in a broad range of physiological activities, such as the formation of lignin, cell wall components, defense against pathogenicity or herbivore, and abiotic stress tolerance. The POD family members have been well-studied and characterized by bioinformatics analysis in several plant species, but no previous genome-wide analysis has been carried out of this gene family in grapevine to date.
resultsWe comprehensively identified 47 PODs in the grapevine genome and are further classified into 7 subgroups based on their phylogenetic analysis. Results of motif composition and gene structure organization analysis revealed that PODs in the same subgroup shared similar conjunction while the protein sequences were highly conserved. Intriguingly, the integrated analysis of chromosomal mapping and gene collinearity analysis proposed that both dispersed and tandem duplication events contributed to the expansion of PODs in grapevine. Also, the gene duplication analysis suggested that most of the genes (20) were dispersed followed by (15) tandem, (9) segmental or whole-genome duplication, and (3) proximal, respectively. The evolutionary analysis of PODs, such as Ka/Ks ratio of the 15 duplicated gene pairs were less than 1.00, indicated that most of the gene pairs exhibiting purifying selection and 7 pairs underwent positive selection with value greater than 1.00. The Gene Ontology Enrichment (GO), Kyoto Encyclopedia of Genes Genomics (KEGG) analysis, and cis-elements prediction also revealed the positive functions of PODs in plant growth and developmental activities, and response to stress stimuli. Further, based on the publically available RNA-sequence data, the expression patterns of PODs in tissue-specific response during several developmental stages revealed diverged expression patterns. Subsequently, 30 genes were selected for RT-PCR validation in response to (NaCl, drought, and ABA), which showed their critical role in grapevine.
conclusionsIn conclusion, we predict that these results will lead to novel insights regarding genetic improvement of grapevine.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.