Evidence map›Paper›PMID 32599710›Full record

ArticleGenes2020

Genetic Basis of Maize Resistance to Multiple Insect Pests: Integrated Genome-Wide Comparative Mapping and Candidate Gene Prioritization.

A Badji, D B Kwemoi, L Machida, D Okii, N Mwila, S Agbahoungba, F Kumi, A Ibanda, A Bararyenya, M Solemanegy and 8 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
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  9. Article
  10. Host plant resistance for fall armyworm management in maize: relevance, status and prospects in Africa and Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  11. Molecular mechanisms, genetic mapping, and genome editing for insect pest resistance in field crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

A BadjiDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.ORCID 0000-0003-1105-9668
D B KwemoiCereals Program, National Crop Resource Research Institute, P.O. Box 7084 Kampala, Uganda.
L MachidaAlliance Bioversity International-CIAT, P.O. Box 24384 Kampala, Uganda.ORCID 0000-0002-0012-3997
D OkiiDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
N MwilaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
S AgbahoungbaLaboratory of Applied Ecology, University of Abomey-Calavi, 01BP 526 Cotonou, Benin.
F KumiDepartment of Crop Science, University of Cape Coast, P.O. Box 5007 PMB Cape Coast, Ghana.ORCID 0000-0001-6719-6413
A IbandaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.ORCID 0000-0003-3323-5837
A BararyenyaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
M SolemanegyDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
T OdongDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
P WasswaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
M OtimCereals Program, National Crop Resource Research Institute, P.O. Box 7084 Kampala, Uganda.
G AseaCereals Program, National Crop Resource Research Institute, P.O. Box 7084 Kampala, Uganda.
M Ochwo-SsemakulaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
H TalwanaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
S KyamanywaDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
P RubaihayoDepartment of Agricultural Production, Makerere Univesity, P.O. Box 7062 Kampala, Uganda.
Makerere University · UGNational Agricultural Research Institute · UGUniversité d'Abomey-Calavi · BJUniversity of Cape Coast · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several species of herbivores feed on maize in field and storage setups, making the development of multiple insect resistance a critical breeding target. In this study, an association mapping panel of 341 tropical maize lines was evaluated in three field environments for resistance to fall armyworm (FAW), whilst bulked grains were subjected to a maize weevil (MW) bioassay and genotyped with Diversity Array Technology's single nucleotide polymorphisms (SNPs) markers. A multi-locus genome-wide association study (GWAS) revealed 62 quantitative trait nucleotides (QTNs) associated with FAW and MW resistance traits on all 10 maize chromosomes, of which, 47 and 31 were discovered at stringent Bonferroni genome-wide significance levels of 0.05 and 0.01, respectively, and located within or close to multiple insect resistance genomic regions (MIRGRs) concerning FAW, SB, and MW. Sixteen QTNs influenced multiple traits, of which, six were associated with resistance to both FAW and MW, suggesting a pleiotropic genetic control. Functional prioritization of candidate genes (CGs) located within 10-30 kb of the QTNs revealed 64 putative GWAS-based CGs (GbCGs) showing evidence of involvement in plant defense mechanisms. Only one GbCG was associated with each of the five of the six combined resistance QTNs, thus reinforcing the pleiotropy hypothesis. In addition, through in silico co-functional network inferences, an additional 107 network-based CGs (NbCGs), biologically connected to the 64 GbCGs, and differentially expressed under biotic or abiotic stress, were revealed within MIRGRs. The provided multiple insect resistance physical map should contribute to the development of combined insect resistance in maize.

Indexed as

Genome-Wide Association StudyAnimalsChromosome MappingDisease ResistanceGenomicsGenotypePest ControlPlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociWeevilsZea mayscombined insect resistancefall armywormfunctional prioritizationmaize weevilQTNsstem borers

Identifiers

PMID32599710
PMCPMC7349181
OpenAlexW3026190944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.