Evidence map›Paper›PMID 32598850›Full record

ReviewChemical reviews2020

Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Carlos R Baiz, Bartosz Błasiak, Jens Bredenbeck, Minhaeng Cho, Jun-Ho Choi, Steven A Corcelli, Arend G Dijkstra, Chi-Jui Feng, Sean Garrett-Roe, Nien-Hui Ge and 20 more

Erratum issuedAbstract readReview
In one paragraph

Review in Chemical reviews, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Local Vibrational Mode Analysis of Phonon Dispersion Relations in Crystals.Journal of chemical theory and computation · 2026
    Article
  7. Structure and Dynamics of Imidazolium in an Ionic Liquid-PEGDA Iongel via IR, 2D-IR, and NMR Spectroscopy.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Magnetic Blocking in Fluoflavine Radical-Bridged Dilanthanide Complexes.Journal of the American Chemical Society · 2025
    Article
  13. Article
  14. Article
  15. A machine learning protocol for predicting structural distributions of amyloid-forming proteins from 2D IR spectra.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Quantum vibropolaritonic sensing.Science advances · 2025
    Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Carlos R BaizDepartment of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0003-0699-8468
Bartosz BłasiakDepartment of Physical and Quantum Chemistry, Wroclaw University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.ORCID 0000-0003-1968-3465
Jens BredenbeckJohann Wolfgang Goethe-University, Institute of Biophysics, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany.ORCID 0000-0003-1929-9092
Minhaeng ChoCenter for Molecular Spectroscopy and Dynamics, Seoul 02841, Republic of Korea.ORCID 0000-0003-1618-1056
Jun-Ho ChoiDepartment of Chemistry, Gwangju Institute of Science and Technology, Gwangju 61005, Republic of Korea.ORCID 0000-0001-5237-5566
Steven A CorcelliDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States.ORCID 0000-0001-6451-4447
Arend G DijkstraSchool of Chemistry and School of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, U.K.
Chi-Jui FengDepartment of Chemistry, James Franck Institute and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0002-4006-9489
Sean Garrett-RoeDepartment of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.ORCID 0000-0001-6199-8773
Nien-Hui GeDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, United States.
Magnus W D Hanson-HeineSchool of Chemistry, University of Nottingham, Nottingham, University Park, Nottingham NG7 2RD, U.K.ORCID 0000-0002-6709-297X
Jonathan D HirstSchool of Chemistry, University of Nottingham, Nottingham, University Park, Nottingham NG7 2RD, U.K.ORCID 0000-0002-2726-0983
Thomas L C JansenUniversity of Groningen, Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands.ORCID 0000-0001-6066-6080
Kijeong KwacCenter for Molecular Spectroscopy and Dynamics, Seoul 02841, Republic of Korea.
Kevin J KubarychDepartment of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109, United States.ORCID 0000-0003-1152-4734
Casey H LonderganDepartment of Chemistry, Haverford College, Haverford, Pennsylvania 19041, United States.ORCID 0000-0002-5257-559X
Hiroaki MaekawaDepartment of Chemistry, University of California at Irvine, Irvine, California 92697-2025, United States.
Mike ReppertChemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada.
Shinji SaitoDepartment of Theoretical and Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan.ORCID 0000-0003-4982-4820
Santanu RoyChemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6110, United States.ORCID 0000-0001-6991-8205
James L SkinnerInstitute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0001-6939-9759
Gerhard StockBiomolecular Dynamics, Institute of Physics, Albert Ludwigs University, 79104 Freiburg, Germany.ORCID 0000-0002-3302-3044
John E StraubDepartment of Chemistry, Boston University, Boston, Massachusetts 02215, United States.
Megan C ThielgesDepartment of Chemistry, Indiana University, 800 East Kirkwood, Bloomington, Indiana 47405, United States.ORCID 0000-0002-4520-6673
Keisuke TominagaMolecular Photoscience Research Center, Kobe University, Nada, Kobe 657-0013, Japan.ORCID 0000-0002-4680-2362
Andrei TokmakoffDepartment of Chemistry, James Franck Institute and Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0002-2434-8744
Hajime ToriiDepartment of Applied Chemistry and Biochemical Engineering, Faculty of Engineering, and Department of Optoelectronics and Nanostructure Science, Graduate School of Science and Technology, Shizuoka University, 3-5-1 Johoku, Naka-Ku, Hamamatsu 432-8561, Japan.ORCID 0000-0002-6061-9599
Lu WangDepartment of Chemistry and Chemical Biology, Institute for Quantitative Biomedicine, Rutgers University, 174 Frelinghuysen Road, Piscataway, New Jersey 08854, United States.ORCID 0000-0001-6230-1835
Lauren J WebbDepartment of Chemistry, The University of Texas at Austin, 105 East 24th Street, STOP A5300, Austin, Texas 78712, United States.ORCID 0000-0001-9999-5500
Martin T ZanniDepartment of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1396, United States.ORCID 0000-0001-7191-9768

Funding

Protein structure and dynamics in ultra-heterogeneous environments-RenewalR35GM133359 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Carlos Raul Baiz · 2019 to 2026
$1.8M
Conformations and Dynamics of Cytochrome P450s via 2D Infrared SpectroscopyR01GM114500 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI THIELGES, MEGAN CORRINE · 2017 to 2022
$1.1M
Theoretical Modeling of the Vibrational Spectroscopy of Nucleic AcidsR01GM130697 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI WANG, LU · 2019 to 2022
$604k
NIGMS NIH HHS R01 GM114500NIGMS NIH HHS R01 GM130697NIGMS NIH HHS R35 GM133359
6 · The paper itself

Abstract

Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and studies of functional materials. Over the past decade, various coherent nonlinear vibrational spectroscopic techniques have been developed and enabled researchers to study time-correlations of the fluctuating frequencies that are directly related to solute-solvent dynamics, dynamical changes in molecular conformations and local electrostatic environments, chemical and biochemical reactions, protein structural dynamics and functions, characteristic processes of functional materials, and so on. In order to gain incisive and quantitative information on the local electrostatic environment, molecular conformation, protein structure and interprotein contacts, ligand binding kinetics, and electric and optical properties of functional materials, a variety of vibrational probes have been developed and site-specifically incorporated into molecular, biological, and material systems for time-resolved vibrational spectroscopic investigation. However, still, an all-encompassing theory that describes the vibrational solvatochromism, electrochromism, and dynamic fluctuation of vibrational frequencies has not been completely established mainly due to the intrinsic complexity of intermolecular interactions in condensed phases. In particular, the amount of data obtained from the linear and nonlinear vibrational spectroscopic experiments has been rapidly increasing, but the lack of a quantitative method to interpret these measurements has been one major obstacle in broadening the applications of these methods. Among various theoretical models, one of the most successful approaches is a semiempirical model generally referred to as the vibrational spectroscopic map that is based on a rigorous theory of intermolecular interactions. Recently, genetic algorithm, neural network, and machine learning approaches have been applied to the development of vibrational solvatochromism theory. In this review, we provide comprehensive descriptions of the theoretical foundation and various examples showing its extraordinary successes in the interpretations of experimental observations. In addition, a brief introduction to a newly created repository Web site (http://frequencymap.org) for vibrational spectroscopic maps is presented. We anticipate that a combination of the vibrational frequency map approach and state-of-the-art multidimensional vibrational spectroscopy will be one of the most fruitful ways to study the structure and dynamics of chemical, biological, and functional molecular systems in the future.

Indexed as

Models, ChemicalHumansProteinsSpectrum AnalysisSpectrum Analysis, RamanStatic ElectricityVibrationProteins

Identifiers

PMID32598850
PMCPMC7710120

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.