Evidence map›Paper›PMID 32596469›Full record

ArticleScience advances2020

Allosteric pluripotency as revealed by protein kinase A.

J A Byun, M Akimoto, B VanSchouwen, T S Lazarou, S S Taylor, G Melacini

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mixed, nonclassical behavior in a classic allosteric protein.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Molecular mechanism of glycolytic flux control intrinsic to human phosphoglycerate kinase.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

J A ByunDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON L8S 4M1, Canada.ORCID 0000-0001-7814-7326
M AkimotoDepartment of Chemistry and Chemical Biology, McMaster University, Hamilton, ON L8S 4M1, Canada.ORCID 0000-0003-0510-5613
B VanSchouwenDepartment of Chemistry and Chemical Biology, McMaster University, Hamilton, ON L8S 4M1, Canada.
T S LazarouDepartment of Chemistry and Chemical Biology, McMaster University, Hamilton, ON L8S 4M1, Canada.ORCID 0000-0003-0547-8460
S S TaylorDepartments of Chemistry and Biochemistry and Pharmacology, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-7702-6108
G MelaciniDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON L8S 4M1, Canada.ORCID 0000-0003-1164-2853
McMaster University · CAUniversity of California San Diego · US

Funding

Lessons Learned from PKA: Assembly of Dynamic Macromolecular SwitchesR35GM130389 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN S. TAYLOR · 2019 to 2026
$5.7M
NIGMS NIH HHS R35 GM130389
6 · The paper itself

Abstract

The functional response of a signaling system to an allosteric stimulus often depends on subcellular conditions, a phenomenon known as pluripotent allostery. For example, a single allosteric modulator, Rp-cAMPS, of the prototypical protein kinase A (PKA) switches from antagonist to agonist depending on MgATP levels. However, the mechanism underlying such pluripotent allostery has remained elusive for decades. Using nuclear magnetic resonance spectroscopy, ensemble models, kinase assays, and molecular dynamics simulations, we show that allosteric pluripotency arises from surprisingly divergent responses of highly homologous tandem domains. The differential responses perturb domain-domain interactions and remodel the free-energy landscape of inhibitory excited states sampled by the regulatory subunit of PKA. The resulting activation threshold values are comparable to the effective free energy of regulatory and catalytic subunit binding, which depends on metabolites, substrates, and mutations, explaining pluripotent allostery and warranting a general redefinition of allosteric targets to include specific subcellular environments.

Indexed as

Cyclic AMP-Dependent Protein KinasesMolecular Dynamics SimulationAllosteric RegulationCatalytic DomainMagnetic Resonance SpectroscopyCyclic AMP-Dependent Protein Kinases

Identifiers

PMID32596469
PMCPMC7304965
OpenAlexW3036464240

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.