Evidence map›Paper›PMID 32595354›Full record

ArticleTurkish journal of biology = Turk biyoloji dergisi2020

Identification of the nucleotide substitutions in 62 SARS-CoV-2 sequences from Turkey.

Ayşe Banu Demİr, Domenico Benvenuto, Hakan AbacioĞlu, Silvia Angeletti, Massimo Ciccozzi

Open access · diamondAbstract read
In one paragraph

Article in Turkish journal of biology = Turk biyoloji dergisi, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Necessary problems in re-emergence of COVID-19.World journal of clinical cases · 2021
    Review
  8. Article
  9. Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.bioRxiv : the preprint server for biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ayşe Banu DemİrDepartment of Medical Biology, Faculty of Medicine, İzmir University of Economics, İzmir Turkey.ORCID https://orcid.org/0000-0003-4616-8151
Domenico BenvenutoUnit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, Rome Italy.ORCID https://orcid.org/0000-0003-3833-2927
Hakan AbacioĞluDepartment of Medical Microbiology, Faculty of Medicine, İzmir University of Economics, İzmir Turkey.ORCID https://orcid.org/0000-0003-3292-1835
Silvia AngelettiUnit of Clinical LaboratoryScience, University CampusBio-Medico of Rome, Rome Italy.ORCID https://orcid.org/0000-0002-7393-8732
Massimo CiccozziUnit of Medical Statistics and Molecular Epidemiology, University Campus Bio-Medico of Rome, Rome Italy.ORCID https://orcid.org/0000-0003-3866-9239
Università Campus Bio-Medico · ITIzmir University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A previously unknown coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been shown to cause coronavirus disease 2019 (COVID-19) pandemic. The first case of COVID-19 in Turkey has been declared in March 11th, 2020 and from there on, more than 150,000 people in the country have been diagnosed with the disease. In this study, 62 viral sequences from Turkey, which have been uploaded to GISAID database, were analyzed by means of their nucleotide substitutions in comparison to the reference SARS-CoV-2 genome from Wuhan. Our results indicate that the viral isolates from Turkey harbor some common mutations with the viral strains from Europe, Oceania, North America and Asia. When the mutations were evaluated, C3037T, C14408T and A23403G were found to be the most common nucleotide substitutions among the viral isolates in Turkey, which are mostly seen as linked mutations and are part of a haplotype observed high in Europe.

Indexed as

COVID-19evolutionmutationSARS-CoV-2

Identifiers

PMID32595354
PMCPMC7314507
OpenAlexW3036851639

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.