Evidence map›Paper›PMID 32592122›Full record

ArticleMolecular biotechnology2020

Development of a Virus-Induced Gene Silencing System for Dioecious Coccinia grandis.

Ravi Suresh Devani, Apurva Kute, Sheeba John, Supriya Adhikari, Sangram Sinha, Anjan Kumar Banerjee

Abstract read
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In one paragraph

Article in Molecular biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ravi Suresh DevaniBiology Division, Indian Institute of Science Education and Research (IISER), Pune, 411008, India.ORCID http://orcid.org/0000-0001-7400-888X
Apurva KuteBiology Division, Indian Institute of Science Education and Research (IISER), Pune, 411008, India.
Sheeba JohnBiology Division, Indian Institute of Science Education and Research (IISER), Pune, 411008, India.
Supriya AdhikariDepartment of Botany, Tripura University, Suryamaninagar, 799022, Tripura, India.
Sangram SinhaDepartment of Botany, Tripura University, Suryamaninagar, 799022, Tripura, India.
Anjan Kumar BanerjeeBiology Division, Indian Institute of Science Education and Research (IISER), Pune, 411008, India. akb@iiserpune.ac.in.ORCID http://orcid.org/0000-0002-1825-7926
Indian Institute of Science Education and Research Pune · INBotanical Survey of India · INCentre National de la Recherche Scientifique · FR

Funding

Department of Biotechnology , Ministry of Science and Technology BT/PR16399/NER/95/125/2015
6 · The paper itself

Abstract

Coccinia grandis is an interesting model system to understand dioecy in Cucurbitaceae family. Recent transcriptomics and proteomics studies carried out to understand the sex expression in C. grandis have resulted in identification of many candidate sex-biased genes. In absence of an efficient genetic transformation protocol for C. grandis, virus-induced gene silencing (VIGS) would be a powerful tool to enable gene functional analysis. In current study, we explored the apple latent spherical virus (ALSV) for gene knockdown in C. grandis. The viral infection was achieved through mechanical inoculation of ALSV-infected Chenopodium quinoa leaf extract onto the cotyledons of C. grandis. ALSV-VIGS mediated knockdown of CgPDS gene was successfully achieved in C. grandis by mechanical inoculation method resulting in characteristic photobleaching. Subsequently, we developed agroinfiltration compatible vectors for direct infection of C. grandis and shortened the time-frame by skipping viral propagation in C. quinoa. Typical yellow-leaf phenotype was observed in C. grandis plants agroinfiltrated with ALSV-CgSU constructs, indicating robust silencing of CgSU gene. In addition, we improved the infection efficiency of ALSV by co-infiltration of P19 viral silencing suppressor. These results suggest that ALSV-VIGS is suitable for characterization of gene function in dioecious C. grandis and it can help us understand the mechanism of sex expression.

Indexed as

CucurbitaceaeGene Expression Regulation, PlantGene SilencingGenetic VectorsPlant LeavesSecoviridaeAgroinfiltrationApple latent spherical virusCoccinia grandisMechanical inoculationPhotobleachingVirus-induced gene silencing

Identifiers

PMID32592122
OpenAlexW3037906007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.