Evidence map›Paper›PMID 32591015›Full record

ArticleHereditas2020

Development of novel EST microsatellite markers for genetic diversity analysis and correlation analysis of velvet antler growth characteristics in Sika deer.

Boyin Jia, Guiwu Wang, Junjun Zheng, Wanyun Yang, Shuzhuo Chang, Jiali Zhang, Yuan Liu, Qining Li, Chenxia Ge, Guang Chen and 2 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Hereditas, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Boyin JiaCollege of Animal Science and Technology, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China.
Guiwu WangInstitute of Wild Economic Animals and Plants and State Key Laboratory for Molecular Biology of Special Economical Animals, Chinese Academy of Agricultural Sciences, 4899 Juye Street, Changchun, 130112, China.
Junjun ZhengInstitute of Wild Economic Animals and Plants and State Key Laboratory for Molecular Biology of Special Economical Animals, Chinese Academy of Agricultural Sciences, 4899 Juye Street, Changchun, 130112, China.
Wanyun YangInstitute of Wild Economic Animals and Plants and State Key Laboratory for Molecular Biology of Special Economical Animals, Chinese Academy of Agricultural Sciences, 4899 Juye Street, Changchun, 130112, China.
Shuzhuo ChangInstitute of Wild Economic Animals and Plants and State Key Laboratory for Molecular Biology of Special Economical Animals, Chinese Academy of Agricultural Sciences, 4899 Juye Street, Changchun, 130112, China.
Jiali ZhangCollege of Animal Science and Technology, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China.
Yuan LiuCollege of Animal Science and Technology, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China.
Qining LiCollege of Animal Science and Technology, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China.
Chenxia GeCollege of Vocational and Technical Education, Changchun Sci-Tech University, 1699 Donghua Street, Changchun, 130606, China.
Guang ChenKey laboratory of Straw Biology and Utilization, The Ministry of Education, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China.
Dongdong LiuKey laboratory of Straw Biology and Utilization, The Ministry of Education, Jilin Agricultural University, 2888 Xincheng Street, Changchun, 130118, China. liudongdong@jlau.edu.cn.ORCID http://orcid.org/0000-0003-4789-7663
Fuhe YangInstitute of Wild Economic Animals and Plants and State Key Laboratory for Molecular Biology of Special Economical Animals, Chinese Academy of Agricultural Sciences, 4899 Juye Street, Changchun, 130112, China. yangfh@126.com.
Chinese Academy of Agricultural Sciences · CNJilin Agricultural University · CNChangchun University · CNJilin University · CN

Funding

Jilin Province Education Department Science and Technology Program during the Thirteenth Five-year Plan Period JJKH20190940KJScience and Technology Development Plan Project of Jilin Province 20190301009NYScience and Technology Development Plan projects of Jilin Province 20170307007YYScientific Research Fund Project of Jilin Agricultural University 201801
6 · The paper itself

Abstract

backgroundSika deer is one of the most popular and valued animals in China. However, few studies have been conducted on the microsatellite of Sika deer, which has hampered the progress of genetic selection breeding. To develop and characterize a set of microsatellites for Sika deer which provide helpful information for protection of Sika deer natural resources and effectively increase the yield and quantity of velvet antler.

resultsWe conducted a transcriptome survey of Sika deer using next-generation sequencing technology. One hundred eighty-two thousand two hundred ninety-five microsatellite markers were identified in the transcriptome, 170 of 200 loci were successfully amplified across panels of 140 individuals from Shuangyang Sika deer population. And 29 loci were found to be obvious polymorphic. Number of alleles is from 3 to 14. The expected heterozygosity ranged from 0.3087 to 0.7644. The observed heterozygosity ranged from 0 to 0.7698. The polymorphism information content values of those microsatellites varied ranged from 0.2602 to 0.7507. The marker-trait association was tested for 6 important and kernel characteristics of two-branched velvet antler in Shuangyang Sika deer through one-way analysis of variance. The results showed that marker-trait associations were identified with 8 different markers, especially M009 and M027.

conclusionsThis study not only provided a large scale of microsatellites which were valuable for future genetic mapping and trait association in Sika deer, but also offers available information for molecular breeding in Sika deer.

Indexed as

Expressed Sequence TagsGenetic Association StudiesGenetic VariationMicrosatellite RepeatsAnimalsAntlersDeerGene Expression ProfilingGenetic MarkersGenetic TestingQuantitative Trait, HeritableQuantitative Trait LociTranscriptomeGenetic MarkersEST microsatellite markersGenetic diversitySika deerTranscriptomeVelvet antler

Identifiers

PMID32591015
PMCPMC7320565
OpenAlexW3037893065

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.