Evidence map›Paper›PMID 32590150›Full record

ArticleJournal of psychiatric research2020

Epigenetics of neuroinflammation: Immune response, inflammatory response and cholinergic synaptic involvement evidenced by genome-wide DNA methylation analysis of delirious inpatients.

Taku Saito, Hiroyuki Toda, Gabrielle N Duncan, Sydney S Jellison, Tong Yu, Mason J Klisares, Sophia Daniel, Allison J Andreasen, Lydia R Leyden, Mandy M Hellman and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of psychiatric research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Observational
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Taku SaitoDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA; Department of Psychiatry, School of Medicine, National Defense Medical College, Tokorozawa, Saitama, Japan.
Hiroyuki TodaDepartment of Psychiatry, School of Medicine, National Defense Medical College, Tokorozawa, Saitama, Japan.
Gabrielle N DuncanDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Sydney S JellisonDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Tong YuDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Mason J KlisaresDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Sophia DanielDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Allison J AndreasenDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Lydia R LeydenDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Mandy M HellmanDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA.
Eri ShinozakiDepartment of Internal Medicine, University of Iowa, Iowa City, IA, USA.
Sangil LeeDepartment of Emergency Medicine, University of Iowa, Iowa City, IA, USA.
Aihide YoshinoDepartment of Psychiatry, School of Medicine, National Defense Medical College, Tokorozawa, Saitama, Japan.
Hyunkeun R ChoDepartment of Biostatistics, College of Public Health, University of Iowa, Iowa City, IA, USA.
Gen ShinozakiDepartment of Psychiatry, University of Iowa, Iowa City, IA, USA; Department of Neurosurgery, Carver College of Medicine, University of Iowa, Iowa City, IA, USA; Department of Anesthesia, Carver College of Medicine, University of Iowa, Iowa City, IA, USA; Iowa Neuroscience Institute, University of Iowa, Iowa City, IA, USA; Interdisciplinary Graduate Program in Neuroscience, University of Iowa, Iowa City, IA, USA. Electronic address: gen-shinozaki@uiowa.edu.
University of Iowa · USNational Defense Medical College · JP

Funding

Epigenetic Investigation of Trauma in PTSD and DepressionK23MH107654 · NIMH · UNIVERSITY OF IOWA · PI SHINOZAKI, GEN · 2015 to 2018
$718k
NIMH NIH HHS K23 MH107654
6 · The paper itself

Abstract

Previously our study has shown that the DNA methylation (DNAm) levels at CpG sites in the pro-inflammatory cytokine gene, TNF-alpha, decrease along with aging, suggesting the potential role of DNAm in aging and heightened inflammatory process leading to increased risk for delirium. However, DNAm differences between delirium cases and non-delirium controls have not been investigated directly. Therefore, we examined genome-wide DNAm differences in blood between patients with delirium and controls to identify useful epigenetic biomarkers for delirium. Data from a total of 87 subjects (43 delirium cases) were analyzed by a genome-wide DNAm case-control association study. A genome-wide significant CpG site near the gene of LDLRAD4 was identified (p = 5.07E-8). In addition, over-representation analysis showed several significant pathways with a false discovery rate adjusted p-value < 0.05. The top pathway with a Gene Ontology term was immune response, and the second top pathway with a Kyoto Encyclopedia of Genes and Genomes term was cholinergic synapse. Significant DNAm differences related to immune/inflammatory response were shown both at gene and pathway levels between patients with delirium and non-delirium controls. This finding indicates that DNAm status in blood has the potential to be used as epigenetic biomarkers for delirium.

Indexed as

DNA MethylationInpatientsCholinergic AgentsCpG IslandsEpigenesis, GeneticHumansImmunityCholinergic AgentsAgingDeliriumGenome-wide DNA methylationImmune responseInflammatory response

Identifiers

PMID32590150
PMCPMC7486988
OpenAlexW3033195954

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.