Evidence map›Paper›PMID 32588141›Full record

ArticleWorld journal of microbiology & biotechnology2020

Genomic and biotechnological insights on stress-linked polyphosphate production induced by chromium(III) in Ochrobactrum anthropi DE2010.

Eduard Villagrasa, Raquel Egea, Neus Ferrer-Miralles, Antonio Solé

Open access · bronzeAbstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Eduard VillagrasaDepartament de Genètica i Microbiologia, Facultat de Biociències, Universitat Autònoma de Barcelona, Campus de la UAB, Bellaterra (Cerdanyola del Vallès), 08193, Barcelona, Spain.
Raquel EgeaServei de Genòmica i Bioinformàtica, Institut de Biotecnologia i de Biomedicina -Parc de Recerca UAB - Mòdul B. Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, 08193, Barcelona, Spain.
Neus Ferrer-MirallesDepartament de Genètica i Microbiologia, Facultat de Biociències, Universitat Autònoma de Barcelona, Campus de la UAB, Bellaterra (Cerdanyola del Vallès), 08193, Barcelona, Spain.
Antonio SoléDepartament de Genètica i Microbiologia, Facultat de Biociències, Universitat Autònoma de Barcelona, Campus de la UAB, Bellaterra (Cerdanyola del Vallès), 08193, Barcelona, Spain. antoni.sole@uab.cat.ORCID http://orcid.org/0000-0002-1151-319X
Universitat Autònoma de Barcelona · ES

Funding

Ministerio de Ciencia, Innovación y Universidades RTA2012-00028-C02-02Ministerio de Economía, Industria y Competitividad, Gobierno de España CTQ2014-54553-C3-2-R, CGL2008-01891
6 · The paper itself

Abstract

The resistance of microorganisms to heavy metals in polluted environments is mediated by genetically determined mechanisms. One such mechanism includes the intracellular sequestration of heavy metals in polyphosphate (polyP) inclusions. In Cr(III) contaminated mediums, Ochrobactrum anthropi DE2010 is able to bind and sequester Cr(III) in polyP inclusions. In order to further study the relationship between Cr(III) tolerance and polyP production in O. anthropi DE2010, we carried out whole genomic sequencing, analysis of single nucleotide polymorphisms (SNPs), polyP chemical quantification, and determination of the relative abundance and morphometry of polyP inclusions. In the O. anthropi DE2010 genome, six polyP and pyrophosphate (PPi) metabolic genes were found. Furthermore, genomic analysis via SNPs calling revealed that O. anthropi ATCC49188 and DE2010 strains had average variations of 1.51% in their whole genome sequences and 1.35% variation associated with the principal polyP metabolic gene cluster. In addition, the accumulation of polyP in the DE2010 strain and number of polyP inclusions found were directly correlated with the concentration of Cr(III) in contaminated cultures. The results presented in this study may enhance the understanding of polyP production in response to Cr(III) toxicity in the O. anthropi DE2010 strain. This knowledge may facilitate the successful removal of Cr(III) from the natural environment.

Indexed as

BiotechnologyGenomicsChromiumCulture MediaGenes, BacterialGenome, BacterialOchrobactrum anthropiPolymorphism, Single NucleotidePolyphosphatesSequence AlignmentStress, PhysiologicalWhole Genome SequencingChromiumCulture MediaPolyphosphatesChromium(III)Cytoplasmic inclusionsGenome sequencingOchrobactrum anthropi DE2010Polyphosphate production

Identifiers

PMID32588141
OpenAlexW3037056781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.