Evidence map›Paper›PMID 32588135›Full record

ArticleCurrent microbiology2020

Characterization and Genome Analysis of a Novel Marine Alteromonas Phage P24.

Xinran Zhang, Yundan Liu, Min Wang, Meiwen Wang, Tong Jiang, Jianhua Sun, Chen Gao, Yong Jiang, Cui Guo, Hongbing Shao and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Microbiology spectrum · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. A NovelMicrobiology spectrum · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Genome and Ecology of a NovelMicrobiology spectrum · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Two NewPHAGE (New Rochelle, N.Y.) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Xinran ZhangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Yundan LiuCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Min WangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Meiwen WangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Tong JiangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Jianhua SunCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Chen GaoCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Cui GuoCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China. hbshao@ouc.edu.cn.
Yantao LiangCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China. liangyantao@ouc.edu.cn.
Andrew McMinnCollege of Marine Life Sciences, Ocean University of China, No. 5 Yushan Road, Shinan District, Qingdao, 266071, People's Republic of China.
Ocean University of China · CNUniversity of Tasmania · AU

Funding

Natural Science Foundation of China No. 41606153Natural Science Foundation of China No. 41976117The Fundamental Research Funds for the Central Universities 201812002
6 · The paper itself

Abstract

Although Alteromonas is ubiquitous in the marine environment, very little is known about Alteromonas phages, with only ten, thus far, being isolated and reported on. In this study, a novel double-stranded DNA phage, Alteromonas phage P24, which infects Alteromonas macleodii, was isolated from the coastal waters off Qingdao. Alteromonas phage P24 has a siphoviral morphology, with an icosahedral head, 61 ± 1 nm in diameter, and a tail length of 105 ± 1 nm. Alteromonas phage P24 contains lipids. It has an optimal temperature and pH for growth of 20℃ and 5-7, respectively. A one-step growth curve shows a latent period of 55 min, a rise period of 65 min, and an average burst size of approximately 147 virions per cell. Alteromonas phage P24 has the genome of 46,945 bp with 43.80% GC content and 74 open reading frames (ORFs) without tRNA. The results of the phylogenetic tree, based on the mcp and terL genes, show that Alteromonas phage P24 is closely related to Aeromonas phage phiARM81ld. Meanwhile, phylogenetic analysis based on the whole genome of P24 indicates that it forms a unique viral sub-cluster within Siphoviridae. This study contributes to the understanding of the genomic characteristics and the virus-host interactions of Alteromonas phages.

Indexed as

AlteromonasBacteriophagesGenome, ViralSiphoviridaeDNA, ViralOpen Reading FramesPhylogenyDNA, Viral

Identifiers

PMID32588135
OpenAlexW3037109494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.