Evidence map›Paper›PMID 32587247›Full record

ArticleNature communications2020

The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer.

Minakshi Gandhi, Matthias Groß, Jessica M Holler, Si'Ana A Coggins, Nitin Patil, Joerg H Leupold, Mathias Munschauer, Monica Schenone, Christina R Hartigan, Heike Allgayer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 172 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. LncRNAInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. The mMolecular cancer · 2024
    Article
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Minakshi GandhiDivision of RNA Biology & Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9813-9638
Matthias GroßDivision of RNA Biology & Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Jessica M HollerDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, USA.
Si'Ana A CogginsDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, USA.
Nitin PatilDepartment of Experimental Surgery-Cancer Metastasis, Medical Faculty Mannheim, Centre for Biomedicine and Medical Technology Mannheim, University of Heidelberg, Mannheim, Germany.
Joerg H LeupoldDepartment of Experimental Surgery-Cancer Metastasis, Medical Faculty Mannheim, Centre for Biomedicine and Medical Technology Mannheim, University of Heidelberg, Mannheim, Germany.
Mathias MunschauerBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6143-4548
Monica SchenoneBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-6456-8768
Christina R HartiganBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Heike AllgayerDepartment of Experimental Surgery-Cancer Metastasis, Medical Faculty Mannheim, Centre for Biomedicine and Medical Technology Mannheim, University of Heidelberg, Mannheim, Germany.ORCID http://orcid.org/0000-0003-2192-5101
Baek KimDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-7986-4335
Sven DiederichsDivision of RNA Biology & Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany. s.diederichs@dkfz.de.ORCID http://orcid.org/0000-0001-7901-4752
Broad Institute · USEmory University · USHeidelberg University · DEGerman Academic Exchange Service · DEGerman Cancer Research Center · DEUniversity of Freiburg · DE

Funding

Lentivirus Replication Strategy and PathogenesisR01AI136581 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01AI150451 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2019 to 2019
$311k
NIAID NIH HHS R01 AI136581NIAID NIH HHS R01 AI150451NIGMS NIH HHS R01 GM104198
6 · The paper itself

Abstract

Long intergenic non-coding RNA-Nucleotide Metabolism Regulator (lincNMR) is a long non-coding RNA (lncRNA) which is induced in hepatocellular carcinoma. Its depletion invokes a proliferation defect, triggers senescence and inhibits colony formation in liver, but also breast and lung cancer cells. Triple-label SILAC proteomics profiles reveal a deregulation of key cell cycle regulators in lincNMR-depleted cells like the key dNTP synthesizing enzymes RRM2, TYMS and TK1, implicating lincNMR in regulating nucleotide metabolism. LincNMR silencing decreases dNTP levels, while exogenous dNTPs rescues the proliferation defect induced by lincNMR depletion. In vivo RNA Antisense Purification (RAP-MS) identifies YBX1 as a direct interaction partner of lincNMR which regulates RRM2, TYMS and TK1 expression and binds to their promoter regions. In a Chick Chorioallantoic Membrane (CAM) in vivo model, lincNMR-depleted tumors are significantly smaller. In summary, we discover a lincRNA, lincNMR, which regulates tumor cell proliferation through a YBX1-RRM2-TYMS-TK1 axis governing nucleotide metabolism.

Indexed as

Gene Expression Regulation, NeoplasticRibonucleoside Diphosphate ReductaseY-Box-Binding Protein 1Carcinoma, HepatocellularCell Line, TumorGene SilencingHumansLiver NeoplasmsLung NeoplasmsNucleotidesRNA, Long NoncodingNucleotidesRibonucleoside Diphosphate Reductaseribonucleotide reductase M2RNA, Long NoncodingY-Box-Binding Protein 1

Identifiers

PMID32587247
PMCPMC7316977
OpenAlexW3037136310

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.