Evidence map›Paper›PMID 32584871›Full record

ArticlePloS one2020

Screening archaeological bone for palaeogenetic and palaeoproteomic studies.

Ioannis Kontopoulos, Kirsty Penkman, Victoria E Mullin, Laura Winkelbach, Martina Unterländer, Amelie Scheu, Susanne Kreutzer, Henrik B Hansen, Ashot Margaryan, Matthew D Teasdale and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 61 citations in OpenAlex.

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  14. Isotope analysis of human dental calculus δRapid communications in mass spectrometry : RCM · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 11 institutions in 6 countries.

Ioannis KontopoulosDepartment of Archaeology, BioArCh, University of York, York, United Kingdom.ORCID 0000-0001-5591-8917
Kirsty PenkmanDepartment of Chemistry, BioArCh, University of York, York, United Kingdom.
Victoria E MullinSmurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland.
Laura WinkelbachPalaeogenetics Group, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg-University Mainz, Mainz, Germany.
Martina UnterländerPalaeogenetics Group, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg-University Mainz, Mainz, Germany.
Amelie ScheuPalaeogenetics Group, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg-University Mainz, Mainz, Germany.
Susanne KreutzerPalaeogenetics Group, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg-University Mainz, Mainz, Germany.ORCID 0000-0001-6286-534X
Henrik B HansenCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Ashot MargaryanCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Matthew D TeasdaleSmurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland.
Birgit GehlenCollaborative Research Centre, project D4, Cologne University, Cologne, Germany.ORCID 0000-0003-1345-8072
Martin StreetMONREPOS Archaeological Research Centre and Museum for Human Behavioural Evolution, RGZM Leibniz Research Institute for Archaeology, Neuwied, Germany.
Niels LynnerupUnit of Forensic Anthropology, Department of Forensic Medicine, University of Copenhagen, Copenhagen, Denmark.
Ioannis LiritzisLaboratory of Archaeometry, Department of Mediterranean Studies, University of the Aegean, Rhodes, Greece.
Adamantios SampsonDepartment of Mediterranean Studies, University of the Aegean, Rhodes, Greece.
Christina PapageorgopoulouLaboratory of Physical Anthropology, Department of History and Ethnology, Democritus University of Thrace, Komotini, Greece.
Morten E AllentoftCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Joachim BurgerPalaeogenetics Group, Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg-University Mainz, Mainz, Germany.
Daniel G BradleySmurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland.
Matthew J CollinsDepartment of Archaeology, McDonald Institute for Archaeological Research, University of Cambridge, Cambridge, United Kingdom.
University of Copenhagen · DKJohannes Gutenberg University Mainz · DEUniversity of York · GBBundeskriminalamt · DEDemocritus University of Thrace · GRHenan University · CNMuseum of London Archaeology · GBNatural History Museum · GBTrinity College Dublin · IEUniversity of Cologne · DEUniversity of the Aegean · GR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The recovery and analysis of ancient DNA and protein from archaeological bone is time-consuming and expensive to carry out, while it involves the partial or complete destruction of valuable or rare specimens. The fields of palaeogenetic and palaeoproteomic research would benefit greatly from techniques that can assess the molecular quality prior to sampling. To be relevant, such screening methods should be effective, minimally-destructive, and rapid. This study reports results based on spectroscopic (Fourier-transform infrared spectroscopy in attenuated total reflectance [FTIR-ATR]; n = 266), palaeoproteomic (collagen content; n = 226), and palaeogenetic (endogenous DNA content; n = 88) techniques. We establish thresholds for three different FTIR indices, a) the infrared splitting factor [IRSF] that assesses relative changes in bioapatite crystals' size and homogeneity; b) the carbonate-to-phosphate [C/P] ratio as a relative measure of carbonate content in bioapatite crystals; and c) the amide-to-phosphate ratio [Am/P] for assessing the relative organic content preserved in bone. These thresholds are both extremely reliable and easy to apply for the successful and rapid distinction between well- and poorly-preserved specimens. This is a milestone for choosing appropriate samples prior to genomic and collagen analyses, with important implications for biomolecular archaeology and palaeontology.

Indexed as

ArchaeologyFossilsProteomicsAnimalsBone and BonesDNA, AncientHumansSpectroscopy, Fourier Transform InfraredDNA, Ancient

Identifiers

PMID32584871
PMCPMC7316274
OpenAlexW3037174362

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.