Evidence map›Paper›PMID 32583743›Full record

ArticleMolecular biology of the cell2020

Roles for a lipid phosphatase in the activation of its opposing lipid kinase.

Bethany S Strunk, Noah Steinfeld, Sora Lee, Natsuko Jin, Cecilia Muñoz-Rivera, Garrison Meeks, Asha Thomas, Camille Akemann, Anna K Mapp, Jason A MacGurn and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Roles of PIKfyve in multiple cellular pathways.Current opinion in cell biology · 2022
    Review
  5. Article
  6. Article
  7. A Compendium of Information on the Lysosome.Frontiers in cell and developmental biology · 2021
    Review
  8. Insights into Lysosomal PI(3,5)PMolecular cell · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Bethany S StrunkLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0003-2337-4614
Noah SteinfeldLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Sora LeeDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN 37232.
Natsuko JinLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Cecilia Muñoz-RiveraDepartment of Biology, Trinity University, San Antonio, TX 78212.
Garrison MeeksDepartment of Biology, Trinity University, San Antonio, TX 78212.
Asha ThomasDepartment of Biology, Trinity University, San Antonio, TX 78212.
Camille AkemannLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Anna K MappLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Jason A MacGurnDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN 37232.
Lois S WeismanLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0001-7740-9785
University of Michigan · USTrinity University · USVanderbilt University · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Scott Soleimanpour · 2013 to 2026
$24.3M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Roles and regulation of PI(3,5)P2 and PI5P in neuronsR01NS064015 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEISMAN, LOIS S · 2009 to 2018
$3.8M
Phosphoinositide signaling: novel potential targets for Huntington diseaseR01NS099340 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEISMAN, LOIS S · 2017 to 2021
$2.7M
Lipid phosphatases as dynamic regulators of protein conformationR00GM120511 · NIGMS · TRINITY UNIVERSITY · PI STRUNK, BETHANY S · 2018 to 2020
$747k
Lipid phosphatases as dynamic regulators of protein conformationK99GM120511 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI STRUNK, BETHANY S · 2016 to 2017
$178k
NIDDK NIH HHS P30 DK020572NIGMS NIH HHS K99 GM120511NIGMS NIH HHS R00 GM120511NIGMS NIH HHS T32 GM007315NINDS NIH HHS R01 NS064015NINDS NIH HHS R01 NS099340
6 · The paper itself

Abstract

Fig4 is a phosphoinositide phosphatase that converts PI3,5P2 to PI3P. Paradoxically, mutation of Fig4 results in lower PI3,5P2, indicating that Fig4 is also required for PI3,5P2 production. Fig4 promotes elevation of PI3,5P2, in part, through stabilization of a protein complex that includes its opposing lipid kinase, Fab1, and the scaffold protein Vac14. Here we show that multiple regions of Fig4 contribute to its roles in the elevation of PI3,5P2: its catalytic site, an N-terminal disease-related surface, and a C-terminal region. We show that mutation of the Fig4 catalytic site enhances the formation of the Fab1-Vac14-Fig4 complex, and reduces the ability to elevate PI3,5P2. This suggests that independent of its lipid phosphatase function, the active site plays a role in the Fab1-Vac14-Fig4 complex. We also show that the N-terminal disease-related surface contributes to the elevation of PI3,5P2 and promotes Fig4 association with Vac14 in a manner that requires the Fig4 C-terminus. We find that the Fig4 C-terminus alone interacts with Vac14 in vivo and retains some functions of full-length Fig4. Thus, a subset of Fig4 functions are independent of its phosphatase domain and at least three regions of Fig4 play roles in the function of the Fab1-Vac14-Fig4 complex.

Indexed as

FlavoproteinsIntracellular Signaling Peptides and ProteinsLipidsMembrane ProteinsPhosphatidylinositol PhosphatesPhosphoinositide PhosphatasesPhosphoric Monoester HydrolasesPhosphotransferases (Alcohol Group Acceptor)Protein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFAB1 protein, S cerevisiaeFIG4 protein, S cerevisiaeFlavoproteinsIntracellular Signaling Peptides and ProteinsLipidsMembrane ProteinsPhosphatidylinositol PhosphatesPhosphoinositide PhosphatasesPhosphoric Monoester HydrolasesPhosphotransferases (Alcohol Group Acceptor)Saccharomyces cerevisiae Proteins

Identifiers

PMID32583743
PMCPMC7525815
OpenAlexW3036335054

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.