Evidence map›Paper›PMID 32583281›Full record

ArticleMolecular biology reports2020

Pancreatic ductal adenocarcinomas from Mexican patients present a distinct genomic mutational pattern.

Paulina Sanchez, Magali Espinosa, Vilma Maldonado, Rodrigo Barquera, Nayeli Belem-Gabiño, Javier Torres, Adrian Cravioto, Jorge Melendez-Zajgla

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Paulina SanchezFunctional Genomics Laboratory, Medical Research Subdirection, Instituto Nacional de Medicina Genomica, Periferico Sur 4809, Tlalpan, Arenal Tepepan, 14610, Mexico, Mexico.
Magali EspinosaFunctional Genomics Laboratory, Medical Research Subdirection, Instituto Nacional de Medicina Genomica, Periferico Sur 4809, Tlalpan, Arenal Tepepan, 14610, Mexico, Mexico.
Vilma MaldonadoEpigenetics Laboratory, Basic Research Subdirection, Instituto Nacional de Medicina Genomica, Periferico Sur 4809, Tlalpan, Arenal Tepepan, 14610, Mexico, Mexico.ORCID http://orcid.org/0000-0003-4633-9694
Rodrigo BarqueraDepartment of Archaeogenetics, Max Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.ORCID http://orcid.org/0000-0003-0518-4518
Nayeli Belem-GabiñoPathology Department, Instituto Nacional de Medicina Genomica, Periferico Sur 4809, Tlalpan, Arenal Tepepan, 14610, Mexico, Mexico.
Javier TorresUnidad de Investigacion en Enfermedades Infecciosas y Parasitarias, Centro Medico Nacional Siglo XXI, IMSS, Mexico, Mexico.
Adrian CraviotoHospital de Especialidades, Centro Medico Nacional Siglo XXI, IMSS, Mexico, Mexico.
Jorge Melendez-ZajglaFunctional Genomics Laboratory, Medical Research Subdirection, Instituto Nacional de Medicina Genomica, Periferico Sur 4809, Tlalpan, Arenal Tepepan, 14610, Mexico, Mexico. jmelendez@inmegen.gob.mx.ORCID http://orcid.org/0000-0002-2209-1607
National Institute of Genomic Medicine · MXCentro Medico Nacional Siglo XXI · MXMax Planck Institute for the Science of Human History · DE

Funding

Consejo Nacional de Ciencia y Tecnología 2011-CO1-161619
6 · The paper itself

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancers in humans, with less than 5% 5-year survival rate. PDAC is characterized by a small number of recurrent mutations, including KRAS, CDKN2A, TP53, and SMAD4 and a long "tail" of infrequent mutated genes. Most of the studies have been performed in US and European populations, so new studies are needed to describe the mutational landscape of these tumors in other cohorts. The present study analyzed the exome and transcriptome of four PDAC tumors from Mexican patients. We found a paucity of the previously described recurrent mutations, with mutations in only three genes (HERC2, CNTNAP2 and HMCN1) previously reported in PDAC with a frequency > 1%. In addition, we discovered several recurrent putative copy number aberrations in SKP2, BRAF, CSSF1R, FOXE1, JAK2 and MET genes and in genes previously reported as putative drivers in PDAC, including KRAS, SF3B1, BRAF, MYC and MET. Although a larger cohort is needed to validate these findings, our results could be pointing toward potential differences in contributing factors for PDAC in Latin-American populations.

Indexed as

MutationAdultAgedBiomarkers, TumorCarcinoma, Pancreatic DuctalCyclin-Dependent Kinase Inhibitor p16FemaleGene FrequencyHumansMaleMiddle AgedPancreatic NeoplasmsProto-Oncogene Proteins p21(ras)Smad4 ProteinTumor Suppressor Protein p53Biomarkers, TumorCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16KRAS protein, humanProto-Oncogene Proteins p21(ras)Smad4 ProteinSMAD4 protein, humanTP53 protein, humanTumor Suppressor Protein p53Exome sequencingPDAC

Identifiers

PMID32583281
OpenAlexW3037513411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.