Evidence map›Paper›PMID 32583030›Full record

ArticleJournal of mathematical biology2020

Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach.

Pavol Bokes, Alessandro Borri, Pasquale Palumbo, Abhyudai Singh

Abstract read
In one paragraph

Article in Journal of mathematical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Genome-Wide Characterization ofPlants (Basel, Switzerland) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pavol BokesComenius University, Bratislava, Slovakia. pavol.bokes@fmph.uniba.sk.ORCID 0000-0002-8414-6933
Alessandro BorriItalian National Research Council (IASI-CNR), Rome, Italy.
Pasquale PalumboItalian National Research Council (IASI-CNR), Rome, Italy.
Abhyudai SinghUniversity of Delaware, Newark, DE, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noise in gene expression can be substantively affected by the presence of production delay. Here we consider a mathematical model with bursty production of protein, a one-step production delay (the passage of which activates the protein), and feedback in the frequency of bursts. We specifically focus on examining the steady-state behaviour of the model in the slow-activation (i.e. large-delay) regime. Using a formal asymptotic approach, we derive an autonomous ordinary differential equation for the inactive protein that applies in the slow-activation regime. If the differential equation is monostable, the steady-state distribution of the inactive (active) protein is approximated by a single Gaussian (Poisson) mode located at the globally stable fixed point of the differential equation. If the differential equation is bistable (due to cooperative positive feedback), the steady-state distribution of the inactive (active) protein is approximated by a mixture of Gaussian (Poisson) modes located at the stable fixed points; the weights of the modes are determined from a WKB approximation to the stationary distribution. The asymptotic results are compared to numerical solutions of the chemical master equation.

Indexed as

Feedback, PhysiologicalGene ExpressionModels, GeneticBiochemical PhenomenaNormal DistributionStochastic ProcessesBurstingExponential asymptoticsLarge deviationsProduction delayStochastic gene expressionWKB approximation

Identifiers

PMID32583030
PMCPMC7363733

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.