Evidence map›Paper›PMID 32582278›Full record

ArticleFrontiers in genetics2020

Using Cellular Automata to Simulate Domain Evolution in Proteins.

Xuan Xiao, Guang-Fu Xue, Biljana Stamatovic, Wang-Ren Qiu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Xuan XiaoComputer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China.
Guang-Fu XueComputer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China.
Biljana StamatovicFaculty of Information Systems and Technologies, University of Donja Gorica, Podgorica, Montenegro.
Wang-Ren QiuComputer Department, Jing-De-Zhen Ceramic Institute, Jingdezhen, China.
Jingdezhen Ceramic Institute · CNUniversity of Donja Gorica · ME

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteins play primary roles in important biological processes such as catalysis, physiological functions, and immune system functions. Thus, the research on how proteins evolved has been a nuclear question in the field of evolutionary biology. General models of protein evolution help to determine the baseline expectations for evolution of sequences, and these models have been extensively useful in sequence analysis as well as for the computer simulation of artificial sequence data sets. We have developed a new method of simulating multi-domain protein evolution, including fusions of domains, insertion, and deletion. It has been observed via the simulation test that the success rates achieved by the proposed predictor are remarkably high. For the convenience of the most experimental scientists, a user-friendly web server has been established at http://jci-bioinfo.cn/domainevo, by which users can easily get their desired results without having to go through the detailed mathematics. Through the simulation results of this website, users can predict the evolution trend of the protein domain architecture.

Indexed as

cellular automatonmulti-domain proteinsprotein domain architectureprotein evolutionsimulation

Identifiers

PMID32582278
PMCPMC7296063
OpenAlexW3035728059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.