Evidence map›Paper›PMID 32581279›Full record

ArticleCommunications biology2020

The genome of pest Rhynchophorus ferrugineus reveals gene families important at the plant-beetle interface.

Khaled Michel Hazzouri, Naganeeswaran Sudalaimuthuasari, Biduth Kundu, David Nelson, Mohammad Ali Al-Deeb, Alain Le Mansour, Johnston J Spencer, Claude Desplan, Khaled M A Amiri

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 62 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Khaled Michel HazzouriKhalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
Naganeeswaran SudalaimuthuasariKhalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
Biduth KunduDepartment of Biology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
David NelsonCenter for Genomics and Systems Biology, New York University Abu Dhabi, PO Box 129188, Abu Dhabi, UAE.
Mohammad Ali Al-DeebDepartment of Biology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
Alain Le MansourDate Palm Tissue Culture, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
Johnston J SpencerDepartment of Entomology, Texas A&M University, TAMU 2475, College Station, TX, USA.ORCID http://orcid.org/0000-0003-4792-2945
Claude DesplanCenter for Genomics and Systems Biology, New York University Abu Dhabi, PO Box 129188, Abu Dhabi, UAE. cd38@nyu.edu.ORCID http://orcid.org/0000-0002-6914-1413
Khaled M A AmiriKhalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, PO Box 15551, Al Ain, UAE. k.amiri@uaeu.ac.ae.ORCID http://orcid.org/0000-0003-3240-2736
United Arab Emirates University · AEKhalifa University of Science and Technology · AENew York University · USNew York University Abu Dhabi · AETexas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The red palm weevil, Rhynchophorus ferrugineus, infests palm plantations, leading to large financial losses and soil erosion. Pest-host interactions are poorly understood in R. ferrugineus, but the analysis of genetic diversity and pest origins will help advance efforts to eradicate this pest. We sequenced the genome of R. ferrugineus using a combination of paired-end Illumina sequencing (150 bp), Oxford Nanopore long reads, 10X Genomics and synteny analysis to produce an assembly with a scaffold N50 of ~60 Mb. Structural variations showed duplication of detoxifying and insecticide resistance genes (e.g., glutathione S-transferase, P450, Rdl). Furthermore, the evolution of gene families identified those under positive selection including one glycosyl hydrolase (GH16) gene family, which appears to result from horizontal gene transfer. This genome will be a valuable resource to understand insect evolution and behavior and to allow the genetic modification of key genes that will help control this pest.

Indexed as

Genome, InsectMultigene FamilyAnimalsBiological EvolutionCytochrome P-450 Enzyme SystemDNA Transposable ElementsFemaleGene Transfer, HorizontalInsect ProteinsMaleMolecular Sequence AnnotationPlantsPopulation DensityReceptors, OdorantSex ChromosomesSyntenyCytochrome P-450 Enzyme SystemDNA Transposable ElementsInsect ProteinsReceptors, Odorant

Identifiers

PMID32581279
PMCPMC7314810
OpenAlexW3037714437

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.