Evidence map›Paper›PMID 32581083›Full record

ArticleJournal of medical genetics2021

Exome and genome sequencing in adults with undiagnosed disease: a prospective cohort study.

Salma Shickh, Mariana Gutierrez Salazar, Kathleen-Rose Zakoor, Conxi Lázaro, Jessica Gu, Jamie Goltz, Dakota Kleinman, Abdul Noor, Sam Khalouei, Chloe Mighton and 27 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medical genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
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  6. Review
  7. Opportunistic genomic screening has clinical utility: An interventional cohort study.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  8. Article
  9. Article
  10. Exome and genome sequencing in a heterogeneous population of patients with rare disease: Identifying predictors of a diagnosis.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. The Interdisciplinary Diagnosis of Rare Diseases.Deutsches Arzteblatt international · 2022
    Observational
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 7 institutions in 3 countries.

Salma ShickhLi Ka Shing Knowledge Institute, St. Michael's Hospital, Unity Health Toronto, Toronto, Ontario, Canada.
Mariana Gutierrez SalazarPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Kathleen-Rose ZakoorPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Conxi LázaroPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Jessica GuPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Jamie GoltzUniversity of Guelph, Guelph, Ontario, Canada.
Dakota KleinmanPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Abdul NoorPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Sam KhaloueiPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Chloe MightonLi Ka Shing Knowledge Institute, St. Michael's Hospital, Unity Health Toronto, Toronto, Ontario, Canada.
Emma RebleLi Ka Shing Knowledge Institute, St. Michael's Hospital, Unity Health Toronto, Toronto, Ontario, Canada.
Rita KodidaLi Ka Shing Knowledge Institute, St. Michael's Hospital, Unity Health Toronto, Toronto, Ontario, Canada.
Yvonne BombardLi Ka Shing Knowledge Institute, St. Michael's Hospital, Unity Health Toronto, Toronto, Ontario, Canada.
Stephanie DiTroiaCenter for Mendelian Genomics, Broad Institute, Cambridge, Massachusetts, USA.
Samantha BaxterCenter for Mendelian Genomics, Broad Institute, Cambridge, Massachusetts, USA.
Nicholas WatkinsPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Melanie CareDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Arnon AdlerDepartment of Cardiology, Peter Munk Cardiac Centre, Toronto General Hospital, Toronto, Ontario, Canada.
Sheri HorsburghFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Oana MorarFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Jillian MurphyDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Dayna-Lynn NevayFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Marta SzybowskaFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Melyssa AronsonZane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Seema PanchalMarvelle Koffler Breast Centre, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Ruth GodoyMarvelle Koffler Breast Centre, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Spring HolterZane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Susan Randall ArmelFamilial Breast and Ovarian Cancer Clinic, Princess Margaret Cancer Centre, Toronto, Ontario, Canada.
Kara SemotiukZane Cohen Centre for Digestive Diseases, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada.
Christine ElserFaculty of Medicine, University of Toronto, Toronto, Ontario, Canada.
Raymond H KimFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.ORCID 0000-0002-2147-8674
David ChitayatDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Joyce SoFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Hanna FaghfouryFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Josh SilverDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Chantal F MorelFred A. Litwin Family Centre in Genetic Medicine, University Health Network, Toronto, Ontario, Canada.
Jordan Lerner-EllisPathology and Laboratory Medicine, Mount Sinai Hospital, Sinai Health System, Toronto, Ontario, Canada jordan.lerner-ellis@sinaihealth.ca.ORCID 0000-0003-3685-5679
Mount Sinai Hospital · CAUniversity Health Network · CASt. Michael's Hospital · CABroad Institute · USUniversity of Toronto · CAPrincess Margaret Cancer Centre · CAUniversity of Guelph · CA

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
CIHR FRN135730NHGRI NIH HHS UM1 HG008900
6 · The paper itself

Abstract

backgroundExome and genome sequencing have been demonstrated to increase diagnostic yield in paediatric populations, improving treatment options and providing risk information for relatives. There are limited studies examining the clinical utility of these tests in adults, who currently have limited access to this technology.

methodsPatients from adult and cancer genetics clinics across Toronto, Ontario, Canada were recruited into a prospective cohort study evaluating the diagnostic utility of exome and genome sequencing in adults. Eligible patients were ≥18 years of age and suspected of having a hereditary disorder but had received previous uninformative genetic test results. In total, we examined the diagnostic utility of exome and genome sequencing in 47 probands and 34 of their relatives who consented to participate and underwent exome or genome sequencing.

resultsOverall, 17% (8/47) of probands had a pathogenic or likely pathogenic variant identified in a gene associated with their primary indication for testing. The diagnostic yield for patients with a cancer history was similar to the yield for patients with a non-cancer history (4/18 (22%) vs 4/29 (14%)). An additional 24 probands (51%) had an inconclusive result. Secondary findings were identified in 10 patients (21%); three had medically actionable results.

conclusionsThis study lends evidence to the diagnostic utility of exome or genome sequencing in an undiagnosed adult population. The significant increase in diagnostic yield warrants the use of this technology. The identification and communication of secondary findings may provide added value when using this testing modality as a first-line test.

Indexed as

Exome SequencingGenetic Predisposition to DiseaseWhole Genome SequencingAdolescentAdultAgedCanadaExomeFemaleGenetic TestingGenome, HumanHumansMaleMiddle AgedMutationUndiagnosed Diseasesclinical geneticsdiagnostics testsgeneticsmolecular genetics

Identifiers

PMID32581083
PMCPMC8475751
OpenAlexW3037757625

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.