Evidence map›Paper›PMID 32581076›Full record

ArticlemSphere2020

HERQ-9 Is a New Multiplex PCR for Differentiation and Quantification of All Nine Human Herpesviruses.

Lari Pyöriä, Maija Jokinen, Mari Toppinen, Henri Salminen, Tytti Vuorinen, Veijo Hukkanen, Constanze Schmotz, Endrit Elbasani, Päivi M Ojala, Klaus Hedman and 2 more

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Absence of DNA viruses in ameloblastomas.European journal of oral sciences · 2026
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  5. DNA Virus Detection in Olfactory Neuroblastomas Using Targeted Enrichment NGS.Neuropathology : official journal of the Japanese Society of Neuropathology · 2026
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  12. Presence of herpesviruses, parvoviruses, and polyomaviruses in sinonasal lymphoma.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2024
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  14. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Lari PyöriäDepartment of Virology, University of Helsinki, Helsinki, Finland.ORCID 0000-0001-9504-5807
Maija JokinenDepartment of Virology, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-5007-7933
Mari ToppinenDepartment of Virology, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-1205-2399
Henri SalminenDepartment of Virology, University of Helsinki, Helsinki, Finland.
Tytti VuorinenInstitute of Biomedicine, University of Turku, Turku, Finland.ORCID 0000-0002-7391-6330
Veijo HukkanenInstitute of Biomedicine, University of Turku, Turku, Finland.ORCID 0000-0002-2867-7844
Constanze SchmotzDepartment of Virology, University of Helsinki, Helsinki, Finland.
Endrit ElbasaniTranslational Cancer Medicine Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-2301-9655
Päivi M OjalaTranslational Cancer Medicine Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland.ORCID 0000-0001-9065-1832
Klaus HedmanDepartment of Virology, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-1779-7960
Hannamari Välimaa *Department of Virology, University of Helsinki, Helsinki, Finland hannamari.valimaa@helsinki.fi maria.perdomo@helsinki.fi.ORCID 0000-0002-2187-2399
Maria F Perdomo *Department of Virology, University of Helsinki, Helsinki, Finland hannamari.valimaa@helsinki.fi maria.perdomo@helsinki.fi.ORCID 0000-0002-9031-4251
University of Helsinki · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infections with the nine human herpesviruses (HHVs) are globally prevalent and characterized by lifelong persistence. Reactivations can potentially manifest as life-threatening conditions for which the demonstration of viral DNA is essential. In the present study, we developed HERQ-9, a pan-HHV quantitative PCR designed in triplex reactions to differentiate and quantify each of the HHV-DNAs: (i) herpes simplex viruses 1 and 2 and varicella-zoster virus; (ii) Epstein-Barr virus, human cytomegalovirus, and Kaposi's sarcoma-associated herpesvirus; and (iii) HHV-6A, -6B, and -7. The method was validated with prequantified reference standards as well as with mucocutaneous swabs and cerebrospinal fluid, plasma, and tonsillar tissue samples. Our findings highlight the value of multiplexing in the diagnosis of many unsuspected, yet clinically relevant, herpesviruses. In addition, we report here frequent HHV-DNA co-occurrences in clinical samples, including some previously unknown. HERQ-9 exhibited high specificity and sensitivity (LOD

Indexed as

AdolescentAdultAgedCell LineChildChild, PreschoolComputer SimulationDNA PrimersDNA ProbesDNA, ViralHerpesviridaeHerpesviridae InfectionsHumansMiddle AgedMultiplex Polymerase Chain ReactionPalatine TonsilDNA PrimersDNA ProbesDNA, ViralcoinfectioncytomegalovirusdiagnosticsEpstein-Barr virusHHV-6human herpesvirusesmultiplexqPCRquantitative methodstonsilsviral persistencevirome

Identifiers

PMID32581076
PMCPMC7316487
OpenAlexW3037876060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.