Evidence map›Paper›PMID 32580713›Full record

ArticleBMC cancer2020

Development of a precision medicine pipeline to identify personalized treatments for colorectal cancer.

Erdem Altunel, Roham S Roghani, Kai-Yuan Chen, So Young Kim, Shannon McCall, Kathryn E Ware, Xiling Shen, Jason A Somarelli, David S Hsu

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Chromatin Remodeling in Patient-Derived Colorectal Cancer Models.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  5. Review
  6. Review
  7. A potent bioactive fraction against colon cancer fromExploration of targeted anti-tumor therapy · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Erdem AltunelDepartment of Medicine, Division of Medical Oncology, Duke University Medical Center, 3008 Snyderman Building, 905 S. LaSalle St., Durham, NC, 27710, USA.
Roham S RoghaniDepartment of Medicine, Division of Medical Oncology, Duke University Medical Center, 3008 Snyderman Building, 905 S. LaSalle St., Durham, NC, 27710, USA.
Kai-Yuan ChenCenter for Genomics and Computational Biology, Duke University, Durham, North Carolina, USA.
So Young KimDuke Functional Genomics Core, Duke University, Durham, North Carolina, USA.
Shannon McCallDepartment of Pathology, Duke University, Durham, North Carolina, USA.
Kathryn E WareDepartment of Medicine, Division of Medical Oncology, Duke University Medical Center, 3008 Snyderman Building, 905 S. LaSalle St., Durham, NC, 27710, USA.
Xiling ShenCenter for Genomics and Computational Biology, Duke University, Durham, North Carolina, USA.
Jason A SomarelliDepartment of Medicine, Division of Medical Oncology, Duke University Medical Center, 3008 Snyderman Building, 905 S. LaSalle St., Durham, NC, 27710, USA.
David S HsuDepartment of Medicine, Division of Medical Oncology, Duke University Medical Center, 3008 Snyderman Building, 905 S. LaSalle St., Durham, NC, 27710, USA. shiaowen.hsu@duke.edu.ORCID http://orcid.org/0000-0002-8149-7180
Duke University · USDuke Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI DONNA NIEDZWIECKI · 1985 to 2026
$174.8M
NCI NIH HHS P30 CA014236
6 · The paper itself

Abstract

backgroundMetastatic colorectal cancer (CRC) continues to be a major health problem, and current treatments are primarily for disease control and palliation of symptoms. In this study, we developed a precision medicine strategy to discover novel therapeutics for patients with CRC.

methodsSix matched low-passage cell lines and patient-derived xenografts (PDX) were established from CRC patients undergoing resection of their cancer. High-throughput drug screens using a 119 FDA-approved oncology drug library were performed on these cell lines, which were then validated in vivo in matched PDXs. RNA-Seq analysis was then performed to identify predictors of response.

resultsOur study revealed marked differences in response to standard-of-care agents across patients and pinpointed druggable pathways to treat CRC. Among these pathways co-targeting of fibroblast growth factor receptor (FGFR), SRC, platelet derived growth factor receptor (PDGFR), or vascular endothelial growth factor receptor (VEGFR) signaling was found to be an effective strategy. Molecular analyses revealed potential predictors of response to these druggable pathways.

conclusionsOur data suggests that the use of matched low-passage cell lines and PDXs is a promising strategy to identify new therapies and pathways to treat metastatic CRC.

Indexed as

AnimalsAntineoplastic AgentsCell Line, TumorColorectal NeoplasmsDNA Mutational AnalysisDrug Screening Assays, AntitumorFemaleHigh-Throughput Screening AssaysHumansMaleMiceMutationPrecision MedicineReceptors, Fibroblast Growth FactorReceptors, Platelet-Derived Growth FactorReceptors, Vascular Endothelial Growth FactorAntineoplastic AgentsReceptors, Fibroblast Growth FactorReceptors, Platelet-Derived Growth FactorReceptors, Vascular Endothelial Growth Factorsrc-Family KinasesHigh-throughput drug screenMetastatic colorectal cancerPatient derived xenograftPonatinib

Identifiers

PMID32580713
PMCPMC7313200
OpenAlexW3038039397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.