Evidence map›Paper›PMID 32579965›Full record

ArticleBiophysical journal2020

The Effect of (-)-Epigallocatechin-3-Gallate on the Amyloid-β Secondary Structure.

Atanu Acharya, Julia Stockmann, Léon Beyer, Till Rudack, Andreas Nabers, James C Gumbart, Klaus Gerwert, Victor S Batista

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  9. Identification of Catechins' Binding Sites in Monomeric AInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Potential of flavonoids as anti-Alzheimer's agents: bench to bedside.Environmental science and pollution research international · 2022
    Review
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  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Atanu AcharyaSchool of Physics, Georgia Institute of Technology, Atlanta, Georgia; School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia.
Julia StockmannBiospectroscopy, Center for Protein Diagnostics, Ruhr University Bochum, Bochum, Germany; Department of Biophysics, Ruhr University Bochum, Bochum, Germany.
Léon BeyerBiospectroscopy, Center for Protein Diagnostics, Ruhr University Bochum, Bochum, Germany; Department of Biophysics, Ruhr University Bochum, Bochum, Germany.
Till RudackBiospectroscopy, Center for Protein Diagnostics, Ruhr University Bochum, Bochum, Germany; Department of Biophysics, Ruhr University Bochum, Bochum, Germany.
Andreas NabersBiospectroscopy, Center for Protein Diagnostics, Ruhr University Bochum, Bochum, Germany; Department of Biophysics, Ruhr University Bochum, Bochum, Germany. Electronic address: andreas.nabers@rub.de.
James C GumbartSchool of Physics, Georgia Institute of Technology, Atlanta, Georgia; School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia.
Klaus GerwertBiospectroscopy, Center for Protein Diagnostics, Ruhr University Bochum, Bochum, Germany; Department of Biophysics, Ruhr University Bochum, Bochum, Germany. Electronic address: gerwert@bph.rub.de.
Victor S BatistaDepartment of Chemistry, Yale University, New Haven, Connecticut. Electronic address: victor.batista@yale.edu.
Ruhr University Bochum · DEGeorgia Institute of Technology · USYale University · US

Funding

Computational and Biochemical Studies of Temperature Effects on Allostery in the Imidazole Glycerol Phosphate Synthase (IGPS) from T. maritimaR01GM106121 · NIGMS · YALE UNIVERSITY · PI BATISTA, VICTOR S, LORIA, JOSEPH P · 2014 to 2021
$2.3M
Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
NIGMS NIH HHS R01 GM106121NIGMS NIH HHS R01 GM123169
6 · The paper itself

Abstract

Amyloid-β (Aβ) is a macromolecular structure of great interest because its misfolding and aggregation, along with changes in the secondary structure, have been correlated with its toxicity in various neurodegenerative diseases. Small drug-like molecules can modulate the amyloid secondary structure and therefore have raised significant interest in applications to active and passive therapies targeting amyloids. In this study, we investigate the interactions of epigallocatechin-3-gallate (EGCG), found in green tea, with Aβ polypeptides, using a combination of in vitro immuno-infrared sensor measurements, docking, molecular dynamics simulations, and ab initio calculations. We find that the interactions of EGCG are dominated by only a few residues in the fibrils, including hydrophobic π-π interactions with aromatic rings of side chains and hydrophilic interactions with the backbone of Aβ, as confirmed by extended (1-μs-long) molecular dynamics simulations. Immuno-infrared sensor data are consistent with degradation of Aβ fibril induced by EGCG and inhibition of Aβ fibril and oligomer formation, as manifested by the recovery of the amide-I band of monomeric Aβ, which is red-shifted by 26 cm

Indexed as

Amyloid beta-PeptidesCatechinAmyloidPeptide FragmentsProtein Structure, SecondaryAmyloidAmyloid beta-PeptidesCatechinepigallocatechin gallatePeptide Fragments

Identifiers

PMID32579965
PMCPMC7376235
OpenAlexW3034211886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.