Evidence map›Paper›PMID 32579737›Full record

ArticleThe Laryngoscope2021

Cell Type-Specific Expression Analysis of the Inner Ear: A Technical Report.

Ronna Hertzano, Kathleen Gwilliam, Kevin Rose, Beatrice Milon, Maggie S Matern

Abstract readTechnical Report
In one paragraph

Article in The Laryngoscope, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Restoring Iron Homeostasis via Smoothened Inhibition: A Novel Strategy Against Hearing Loss.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Distinct endothelial gene responses to acute exercise in skeletal muscle.American journal of physiology. Endocrinology and metabolism · 2025
    Article
  3. Roles of Sirtuins in Hearing Protection.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Alternative splicing in shaping the molecular landscape of the cochlea.Frontiers in cell and developmental biology · 2023
    Review
  8. The Genomics of Auditory Function and Disease.Annual review of genomics and human genetics · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ronna HertzanoDepartment of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, 16 S Eutaw St. Suite 500, Baltimore, Maryland, 21201, U.S.A.ORCID 0000-0002-8093-6567
Kathleen GwilliamDepartment of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, 16 S Eutaw St. Suite 500, Baltimore, Maryland, 21201, U.S.A.
Kevin RoseDepartment of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, 16 S Eutaw St. Suite 500, Baltimore, Maryland, 21201, U.S.A.
Beatrice MilonDepartment of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, 16 S Eutaw St. Suite 500, Baltimore, Maryland, 21201, U.S.A.ORCID 0000-0001-9208-9134
Maggie S MaternDepartment of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, 16 S Eutaw St. Suite 500, Baltimore, Maryland, 21201, U.S.A.

Funding

Vascular Biology Training ProgramT32HL007698 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI Rosemary A Kozar, Dudley K. Strickland · 1991 to 2026
$8.7M
AUTOSOMAL DOMINANT NONSYNDROMIC HEARING LOSSR01DC003544 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1998 to 2017
$7.8M
COMPARATIVE AND EVOLUTIONARY BIOLOGY OF HEARINGT32DC000046 · NIDCD · UNIV OF MARYLAND, COLLEGE PARK · PI Catherine Emily Carr, Matthew J. Goupell · 1994 to 2026
$7.5M
Cellular and Molecular Mechanisms of Cochlear InnervationR01DC016595 · NIDCD · GEORGETOWN UNIVERSITY · PI Thomas M Coate · 2018 to 2026
$4.4M
Cell Type Specific Transcriptional Cascades in Inner Ear DevelopmentR01DC013817 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI HERTZANO, RONNA · 2015 to 2022
$3.6M
Cell Type Specific Transcriptional Cascades in Inner Ear DevelopmentU01DC013817 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI AHMED, ZUBAIR M. · 2023 to 2025
$1.6M
The gEAR portal - Advancing Data Sharing, Analysis and Discovery for Hearing and Balance ResearchR01DC019370 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI MAHURKAR, ANUP · 2021 to 2022
$1.5M
To be or not to be_GFI1 as a critical factor in hair cell fate and survivalF31DC016218 · NIDCD · UNIVERSITY OF MARYLAND BALTIMORE · PI MATERN, MAGGIE S. · 2017 to 2018
$60k
Hearing Health Foundation The Hearing Restoration ProjectNHLBI NIH HHS T32 HL007698NHLBI NIH HHS T32HL007698-22A1S1NIDCD NIH HHS F31 DC016218NIDCD NIH HHS F31DC016218NIDCD NIH HHS R01 DC003544NIDCD NIH HHS R01 DC013817NIDCD NIH HHS R01 DC016595NIDCD NIH HHS R01 DC019370NIDCD NIH HHS RO1DC013817NIDCD NIH HHS RO1DC016595NIDCD NIH HHS RO1DC03544NIDCD NIH HHS T32 DC000046NIDCD NIH HHS T32DC00046NIDCD NIH HHS U01 DC013817United States-Israel Binational Science Foundation 2017218U.S. Department of Defense MR130240
6 · The paper itself

Abstract

objectiveThe cellular diversity of the inner ear has presented a technical challenge in obtaining molecular insight into its development and function. The application of technological advancements in cell type-specific expression enable clinicians and researchers to leap forward from classic genetics to obtaining mechanistic understanding of congenital and acquired hearing loss. This understanding is essential for development of therapeutics to prevent and reverse diseases of the inner ear, including hearing loss. The objective of this study is to describe and compare the available tools for cell type-specific analysis of the ear, as a means to support decision making in study design. STUDY

designThree major approaches for cell type-specific analysis of the ear including fluorescence-activated cell sorting (FACS), ribosomal and RNA pulldown techniques, and single cell RNA-seq (scRNA-seq) are compared and contrasted using both published and original data.

resultsWe demonstrate the strength and weaknesses of these approaches leading to the inevitable conclusion that to maximize the utility of these approaches, it is important to match the experimental approach with the tissue of origin, cell type of interest, and the biological question. Often, a combined approach (eg, cell sorting and scRNA-seq or expression analysis using 2 separate approaches) is required. Finally, new tools for visualization and analysis of complex expression data, such as the gEAR platform (umgear.org), collate cell type-specific gene expression from the ear field and provide unprecedented access to both clinicians and researchers. LEVEL OF EVIDENCE: N/A Laryngoscope, 131:S1-S16, 2021.

Indexed as

Gene Expression ProfilingAnimalsDecision MakingEar, InnerFlow CytometryFluorescent DyesGene ExpressionHearing LossHumansMiceMice, TransgenicOrgan of CortiPyridinium CompoundsQuaternary Ammonium CompoundsRibosomesRNAFluorescent DyesFM1 43Pyridinium CompoundsQuaternary Ammonium CompoundsRNAInner earRiboTagRNA-seqscRNA-seqtranscriptome

Identifiers

PMID32579737
PMCPMC8996438

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.