Evidence map›Paper›PMID 32579554›Full record

ArticlePLoS computational biology2020

Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis.

Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug

Abstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulatory mechanisms of cytoneme-based morphogen transport.Cellular and molecular life sciences : CMLS · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jakob RosenbauerJohn von Neumann Institute for Computing, Jülich Supercomputer Centre, Forschungszentrum Jülich, Jülich, Germany.ORCID 0000-0002-4446-2376
Chengting ZhangLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0003-1539-0593
Benjamin MattesLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0001-5286-9347
Ines ReinartzSteinbuch Centre for Computing, Karlsruhe Institute for Technology, Karlsruhe, Germany.
Kyle WedgwoodLiving Systems Institute, Centre for Biomedical Modelling and Analysis, College of Engineering, Mathematics, and Physical Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0002-8109-2765
Simone SchindlerLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0003-1028-3115
Claude SinnerSteinbuch Centre for Computing, Karlsruhe Institute for Technology, Karlsruhe, Germany.
Steffen ScholppLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0002-4903-9657
Alexander SchugJohn von Neumann Institute for Computing, Jülich Supercomputer Centre, Forschungszentrum Jülich, Jülich, Germany.ORCID 0000-0002-0534-502X

Funding

Biotechnology and Biological Sciences Research Council BB/S016295/1Medical Research Council MR/P01478X/1Medical Research Council MR/S007970/1Wellcome Trust WT105618MA
6 · The paper itself

Abstract

During embryogenesis, morphogens form a concentration gradient in responsive tissue, which is then translated into a spatial cellular pattern. The mechanisms by which morphogens spread through a tissue to establish such a morphogenetic field remain elusive. Here, we investigate by mutually complementary simulations and in vivo experiments how Wnt morphogen transport by cytonemes differs from typically assumed diffusion-based transport for patterning of highly dynamic tissue such as the neural plate in zebrafish. Stochasticity strongly influences fate acquisition at the single cell level and results in fluctuating boundaries between pattern regions. Stable patterning can be achieved by sorting through concentration dependent cell migration and apoptosis, independent of the morphogen transport mechanism. We show that Wnt transport by cytonemes achieves distinct Wnt thresholds for the brain primordia earlier compared with diffusion-based transport. We conclude that a cytoneme-mediated morphogen transport together with directed cell sorting is a potentially favored mechanism to establish morphogen gradients in rapidly expanding developmental systems.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsApoptosisbeta CateninBody PatterningBrainCell LineageCell MovementComputational BiologyComputer SimulationEmbryonic DevelopmentNeural CrestNeural PlateProtein TransportSignal TransductionSoftwarebeta CateninWnt Proteins

Identifiers

PMID32579554
PMCPMC7340325

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.