Evidence map›Paper›PMID 32576860›Full record

ArticleScientific reports2020

Horizontal gene transfer and silver nanoparticles production in a new Marinomonas strain isolated from the Antarctic psychrophilic ciliate Euplotes focardii.

Maria Sindhura John, Joseph Amruthraj Nagoth, Kesava Priyan Ramasamy, Patrizia Ballarini, Matteo Mozzicafreddo, Alessio Mancini, Andrea Telatin, Pietro Liò, Gabriele Giuli, Antonino Natalello and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

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  14. Psychrophiles: A journey of hope.Journal of biosciences · 2021
    Review
  15. Endolysins from AntarcticMarine drugs · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Maria Sindhura John *School of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Joseph Amruthraj Nagoth *School of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Kesava Priyan Ramasamy *School of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Patrizia BallariniSchool of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Matteo MozzicafreddoSchool of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.ORCID http://orcid.org/0000-0001-9835-8446
Alessio ManciniSchool of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Andrea TelatinQuadram Institute Bioscience, Gut Microbes and Health Institute Strategic Program, Norwich Research Park, Norwich, UK.ORCID http://orcid.org/0000-0001-7619-281X
Pietro LiòComputer Laboratory, University of Cambridge, 15 JJ Thomson Avenue, Cambridge, UK.
Gabriele GiuliSchool of Science and Technology, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.
Antonino NatalelloDepartment of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, 2, 20126, Milano, Italy.ORCID http://orcid.org/0000-0002-1489-272X
Cristina MiceliSchool of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy.ORCID http://orcid.org/0000-0002-7829-8471
Sandra PucciarelliSchool of Bioscience and Veterinary Medicine, University of Camerino, Via Gentile III da Varano, 1, 62032, Camerino, Italy. sandra.pucciarelli@unicam.it.
Università di Camerino · ITNorwich Research Park · GBUniversity of Cambridge · GBUniversity of Milano-Bicocca · IT

Funding

Medical Research Council MR/T030062/1
6 · The paper itself

Abstract

We isolated a novel bacterial strain from a prokaryotic consortium associated to the psychrophilic marine ciliate Euplotes focardii, endemic of the Antarctic coastal seawater. The 16S rDNA sequencing and the phylogenetic analysis revealed the close evolutionary relationship to the Antarctic marine bacterium Marinomonas sp. BSw10506 and the sub antarctic Marinomonas polaris. We named this new strain Marinomonas sp. ef1. The optimal growth temperature in LB medium was 22 °C. Whole genome sequencing and analysis showed a reduced gene loss limited to regions encoding for transposases. Additionally, five genomic islands, e.g. DNA fragments that facilitate horizontal gene transfer phenomena, were identified. Two open reading frames predicted from the genomic islands coded for enzymes belonging to the Nitro-FMN-reductase superfamily. One of these, the putative NAD(P)H nitroreductase YfkO, has been reported to be involved in the bioreduction of silver (Ag) ions and the production of silver nanoparticles (AgNPs). After the Marinomonas sp. ef1 biomass incubation with 1 mM of AgNO

Indexed as

Gene Transfer, HorizontalAnti-Bacterial AgentsDNA, BacterialDNA, RibosomalEuplotesFibroblastsGenes, BacterialGenome, BacterialHumansMarinomonasMetal NanoparticlesPhylogenyRNA, Ribosomal, 16SSeawaterSilverAnti-Bacterial AgentsDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SSilver

Identifiers

PMID32576860
PMCPMC7311414
OpenAlexW3036162864

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.