Evidence map›Paper›PMID 32576850›Full record

ArticleScientific reports2020

Two novel fish paralogs provide insights into the Rid family of imine deaminases active in pre-empting enamine/imine metabolic damage.

Stefania Digiovanni, Cristina Visentin, Genny Degani, Alberto Barbiroli, Matteo Chiara, Luca Regazzoni, Flavio Di Pisa, Andrew J Borchert, Diana M Downs, Stefano Ricagno and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. RidA proteins contribute to fitness ofMicrobial cell (Graz, Austria) · 2024
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Stefania DigiovanniDepartment of Biosciences, University of Milan, Milan, Italy.
Cristina VisentinDepartment of Biosciences, University of Milan, Milan, Italy.
Genny DeganiDepartment of Biosciences, University of Milan, Milan, Italy.
Alberto BarbiroliDepartment of Food, Environmental and Nutritional Sciences, University of Milan, Milan, Italy.
Matteo ChiaraDepartment of Biosciences, University of Milan, Milan, Italy.
Luca RegazzoniDepartment of Pharmaceutical Sciences, University of Milan, Milan, Italy.
Flavio Di PisaDepartment of Biosciences, University of Milan, Milan, Italy.
Andrew J BorchertDepartment of Microbiology, University of Georgia, Athens, GA, United States.
Diana M DownsDepartment of Microbiology, University of Georgia, Athens, GA, United States.
Stefano RicagnoDepartment of Biosciences, University of Milan, Milan, Italy.
Maria Antonietta VanoniDepartment of Biosciences, University of Milan, Milan, Italy. maria.vanoni@unimi.it.
Laura PopoloDepartment of Biosciences, University of Milan, Milan, Italy. laura.popolo@unimi.it.
University of Milan · ITNational Renewable Energy Laboratory · USUniversity of Georgia · US

Funding

Rid family members neutralize endogenous metabolic stressorsR01GM095837 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DOWNS, DIANA M. · 2011 to 2023
$3.7M
NIGMS NIH HHS R01 GM095837
6 · The paper itself

Abstract

Reactive Intermediate Deaminase (Rid) protein superfamily includes eight families among which the RidA is conserved in all domains of life. RidA proteins accelerate the deamination of the reactive 2-aminoacrylate (2AA), an enamine produced by some pyridoxal phosphate (PLP)-dependent enzymes. 2AA accumulation inhibits target enzymes with a detrimental impact on fitness. As a consequence of whole genome duplication, teleost fish have two ridA paralogs, while other extant vertebrates contain a single-copy gene. We investigated the biochemical properties of the products of two paralogs, identified in Salmo salar.

Indexed as

AcrylatesAminohydrolasesAnimalsCatalysisCrystallizationDeaminationIminesIn Vitro TechniquesMultigene FamilyMutationPyridoxal PhosphateSalmonella entericaSalmo salarAcrylatesAminohydrolasesIminesPyridoxal Phosphate

Identifiers

PMID32576850
PMCPMC7311433
OpenAlexW3036017838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.