Evidence map›Paper›PMID 32576658›Full record

ArticleThe Journal of biological chemistry2020

Structural analysis of the catalytic domain of Artemis endonuclease/SNM1C reveals distinct structural features.

Md Fazlul Karim, Shanshan Liu, Adrian R Laciak, Leah Volk, Mary Koszelak-Rosenblum, Michael R Lieber, Mousheng Wu, Rory Curtis, Nian N Huang, Grant Carr and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Structure and Function of SNM1 Family Nucleases.Advances in experimental medicine and biology · 2023
    Review
  7. Review
  8. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Md Fazlul KarimDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Shanshan LiuDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Adrian R LaciakDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Leah VolkDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Mary Koszelak-RosenblumDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.ORCID 0000-0002-8210-8722
Michael R LieberUSC Norris Comprehensive Cancer Center, Departments of Pathology, Biochemistry & Molecular Biology, and Molecular Microbiology & Immunology, and the Molecular and Computational Biology Section of the Department of Biological Sciences, University of Southern California Keck School of Medicine, Los Angeles, California, USA.
Mousheng WuChemistry Department, Drug Discovery Division, Southern Research, Birmingham, Alabama, USA.ORCID 0000-0001-7285-1363
Rory CurtisDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Nian N HuangDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA.
Grant CarrDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA grant.carr@amriglobal.com Guangyu.Zhu@amriglobal.com.
Guangyu ZhuDiscovery Biology, Albany Molecular Research Inc., Buffalo, New York, USA grant.carr@amriglobal.com Guangyu.Zhu@amriglobal.com.ORCID 0000-0003-4228-135X
Albany Molecular Research (United States) · USSouthern Research Institute · USUniversity of Southern California · US

Funding

MECHANISM AND REGULATION OF NONHOMOLOGOUS DNA ENDJOININGR01CA100504 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIEBER, MICHAEL R · 2003 to 2021
$5.0M
Site-Specific Recombination in Human Health & DiseaseR35GM118009 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIEBER, MICHAEL R · 2016 to 2025
$4.4M
Mechanisms of Human Lymphoid Chromosomal TranslocationR01CA196671 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIEBER, MICHAEL R · 2016 to 2021
$1.9M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS R01 CA100504NCI NIH HHS R01 CA196671NIGMS NIH HHS R35 GM118009
6 · The paper itself

Abstract

The endonuclease Artemis is responsible for opening DNA hairpins during V(D)J recombination and for processing a subset of pathological DNA double-strand breaks. Artemis is an attractive target for the development of therapeutics to manage various B cell and T cell tumors, because failure to open DNA hairpins and accumulation of chromosomal breaks may reduce the proliferation and viability of pre-T and pre-B cell derivatives. However, structure-based drug discovery of specific Artemis inhibitors has been hampered by a lack of crystal structures. Here, we report the structure of the catalytic domain of recombinant human Artemis. The catalytic domain displayed a polypeptide fold similar overall to those of other members in the DNA cross-link repair gene SNM1 family and in mRNA 3'-end-processing endonuclease CPSF-73, containing metallo-β-lactamase and β-CASP domains and a cluster of conserved histidine and aspartate residues capable of binding two metal atoms in the catalytic site. As in SNM1A, only one zinc ion was located in the Artemis active site. However, Artemis displayed several unique features. Unlike in other members of this enzyme class, a second zinc ion was present in the β-CASP domain that leads to structural reorientation of the putative DNA-binding surface and extends the substrate-binding pocket to a new pocket, pocket III. Moreover, the substrate-binding surface exhibited a dominant and extensive positive charge distribution compared with that in the structures of SNM1A and SNM1B, presumably because of the structurally distinct DNA substrate of Artemis. The structural features identified here may provide opportunities for designing selective Artemis inhibitors.

Indexed as

Protein FoldingAnimalsCatalytic DomainDNA-Binding ProteinsEndonucleasesHumansSf9 CellsSpodopteraStructure-Activity RelationshipZincDCLRE1C protein, humanDNA-Binding ProteinsEndonucleasesZincArtemiscrystal structureDNA processingendonucleasehairpin openingprotein crystallizationprotein expressionprotein purificationprotein structureSNM1CSNM1 familyV(D)J recombination

Identifiers

PMID32576658
PMCPMC7458816
OpenAlexW3037672119

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.