Evidence map›Paper›PMID 32576161›Full record

ArticleBMC biotechnology2020

Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system.

Remi L Gratacap, Tim Regan, Carola E Dehler, Samuel A M Martin, Pierre Boudinot, Bertrand Collet, Ross D Houston

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Efficient Gene Editing in Fish Primary Germline Stem Cells.International journal of molecular sciences · 2026
    Article
  6. Advances in Fish Gene Editing.Animals : an open access journal from MDPI · 2026
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
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  15. Review
  16. Article
  17. 3 Biotech · 2024
    Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Remi L GratacapThe Roslin Institute, University of Edinburgh, Easter Bush campus, Midlothian, UK. Remi.Gratacap@ed.ac.uk.ORCID 0000-0001-9853-2205
Tim ReganThe Roslin Institute, University of Edinburgh, Easter Bush campus, Midlothian, UK.
Carola E DehlerInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK.
Samuel A M MartinInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, UK.
Pierre BoudinotVirologie et Immunologie Moleculaires, Institut National de Recherche Agronomique (INRA), Universite Paris-Saclay, Jouy-en-Josas, France.
Bertrand ColletVirologie et Immunologie Moleculaires, Institut National de Recherche Agronomique (INRA), Universite Paris-Saclay, Jouy-en-Josas, France.
Ross D HoustonThe Roslin Institute, University of Edinburgh, Easter Bush campus, Midlothian, UK. Ross.Houston@roslin.ed.ac.uk.
Roslin Institute · GBInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversity of Aberdeen · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R008612/1Biotechnology and Biological Sciences Research Council BB/R008973/1Biotechnology and Biological Sciences Research Council BB/S004343/1Biotechnology and Biological Sciences Research Council BBS/E/D/10002070Biotechnology and Biological Sciences Research Council BBS/E/D/20002172Biotechnology and Biological Sciences Research Council BBS/E/D/30002275
6 · The paper itself

Abstract

backgroundGenome editing is transforming bioscience research, but its application to non-model organisms, such as farmed animal species, requires optimisation. Salmonids are the most important aquaculture species by value, and improving genetic resistance to infectious disease is a major goal. However, use of genome editing to evaluate putative disease resistance genes in cell lines, and the use of genome-wide CRISPR screens is currently limited by a lack of available tools and techniques.

resultsIn the current study, we developed an optimised protocol using lentivirus transduction for efficient integration of constructs into the genome of a Chinook salmon (Oncorhynchus tshwaytcha) cell line (CHSE-214). As proof-of-principle, two target genes were edited with high efficiency in an EGFP-Cas9 stable CHSE cell line; specifically, the exogenous, integrated EGFP and the endogenous RIG-I locus. Finally, the effective use of antibiotic selection to enrich the successfully edited targeted population was demonstrated.

conclusionsThe optimised lentiviral-mediated CRISPR method reported here increases possibilities for efficient genome editing in salmonid cells, in particular for future applications of genome-wide CRISPR screens for disease resistance.

Indexed as

AnimalsCell LineCell SurvivalClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCRISPR-Cas SystemsDisease ResistanceGene EditingGenomeLentivirusSalmonidaeCRISPR-Associated ProteinsCHSECRISPRDisease resistanceGene editingLentivirusSalmon

Identifiers

PMID32576161
PMCPMC7310381
OpenAlexW3036606887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.