ArticleBMC genomics2020
De novo transcriptome sequencing and analysis of salt-, alkali-, and drought-responsive genes in Sophora alopecuroides.
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed, 64 citations in OpenAlex.
- Comparative transcriptomic profiles of Haloxylon ammodendron under the salinity stress.BMC genomics · 2025Article
- Mechanistic insights and future perspectives of drought stress management in staple crops.Frontiers in plant science · 2025Review
- Genome-wide analysis of HD-Zip genes in Sophora alopecuroides and their role in salt stress response.The plant genome · 2024Article
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- Effects of Water and Nitrogen on Growth, Rhizosphere Environment, and Microbial Community ofPlants (Basel, Switzerland) · 2024Article
- Integration analysis of miRNA-mRNA pairs between two contrasting genotypes reveals the molecular mechanism of jujube (Ziziphus jujuba Mill.) response to high-temperature stress.BMC plant biology · 2024Article
- Genome-Wide Identification ofInternational journal of molecular sciences · 2024Article
- Transcriptome-Based Identification of the SaR2R3-MYB Gene Family inPlants (Basel, Switzerland) · 2024Article
- Analysis of Genes Associated with Feeding Preference and Detoxification in Various Developmental Stages ofInsects · 2024Article
- Transcriptomic analysis reveals candidate genes associated with salinity stress tolerance during the early vegetative stage in fababean genotype, Hassawi-2.Scientific reports · 2023Article
- Transcriptome-Wide Analysis of Core Transcription Factors Associated with Defense Responses in Autotetraploid versus Diploid Rice under Saline Stress and Recovery.International journal of molecular sciences · 2023Article
- Sand Burial, Rather than Salinity or Drought, Is the Main Stress That Limits the Germination Ability ofPlants (Basel, Switzerland) · 2023Article
- Transcriptome analysis reveals defense-related genes and pathways during dodder (Frontiers in genetics · 2023Article
- New Insight into Plant Saline-Alkali Tolerance Mechanisms and Application to Breeding.International journal of molecular sciences · 2022Review
- Grapevine (Vitis vinifera) responses to salt stress and alkali stress: transcriptional and metabolic profiling.BMC plant biology · 2022Article
- Identification of Potential Pathways ofPlants (Basel, Switzerland) · 2022Article
- Physio-Morphological, Biochemical and Transcriptomic Analyses Provide Insights Into Drought Stress Responses inFrontiers in plant science · 2022Article
- Article
- Physiological Analysis and Transcriptome Sequencing Reveal the Effects of Salt Stress on Banana (Frontiers in plant science · 2022Article
- Integrated transcriptome and small RNA sequencing analyses reveal a drought stress response network in Sophora tonkinensis.BMC plant biology · 2021Article
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSalinity, alkalinity, and drought stress are the main abiotic stress factors affecting plant growth and development. Sophora alopecuroides L., a perennial leguminous herb in the genus Sophora, is a highly salt-tolerant sand-fixing pioneer species distributed mostly in Western Asia and northwestern China. Few studies have assessed responses to abiotic stress in S. alopecuroides. The transcriptome of the genes that confer stress-tolerance in this species has not previously been sequenced. Our objective was to sequence and analyze this transcriptome.
resultsTwelve cDNA libraries were constructed in triplicate from mRNA obtained from Sophora alopecuroides for the control and salt, alkali, and drought treatments. Using de novo assembly, 902,812 assembled unigenes were generated, with an average length of 294 bp. Based on similarity searches, 545,615 (60.43%) had at least one significant match in the Nr, Nt, Pfam, KOG/COG, Swiss-Prot, and GO databases. In addition, 1673 differentially expressed genes (DEGs) were obtained from the salt treatment, 8142 from the alkali treatment, and 17,479 from the drought treatment. A total of 11,936 transcription factor genes from 82 transcription factor families were functionally annotated under salt, alkali, and drought stress, these include MYB, bZIP, NAC and WRKY family members. DEGs were involved in the hormone signal transduction pathway, biosynthesis of secondary metabolites and antioxidant enzymes; this suggests that these pathways or processes may be involved in tolerance towards salt, alkali, and drought stress in S. alopecuroides.
conclusionOur study first reported transcriptome reference sequence data in Sophora alopecuroides, a non-model plant without a reference genome. We determined digital expression profile and discovered a broad survey of unigenes associated with salt, alkali, and drought stress which provide genomic resources available for Sophora alopecuroides.
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