Evidence map›Paper›PMID 32574560›Full record

ArticleNeuron2020

Soma-Targeted Imaging of Neural Circuits by Ribosome Tethering.

Yiming Chen, Heeun Jang, Perry W E Spratt, Seher Kosar, David E Taylor, Rachel A Essner, Ling Bai, David E Leib, Tzu-Wei Kuo, Yen-Chu Lin and 7 more

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Neuron, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  9. Article
  10. Article
  11. Review
  12. Identifying dysfunctional cell types and circuits in animal models for psychiatric disorders with calcium imaging.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Review
  13. Article
  14. Scanless two-photon voltage imaging.Nature communications · 2024
    Article
  15. Review
  16. Article
  17. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Yiming ChenNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Heeun JangBuck Institute for Research on Aging, Novato, CA 94945, USA.
Perry W E SprattNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Seher KosarDepartment of Physiology, University of California, San Francisco, San Francisco, CA 94158, USA.
David E TaylorNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Rachel A EssnerDepartment of Physiology, University of California, San Francisco, San Francisco, CA 94158, USA.
Ling BaiDepartment of Physiology, University of California, San Francisco, San Francisco, CA 94158, USA.
David E LeibNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Tzu-Wei KuoNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Yen-Chu LinDepartment of Physiology, University of California, San Francisco, San Francisco, CA 94158, USA.
Mili PatelNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA.
Aygul SubkhangulovaBuck Institute for Research on Aging, Novato, CA 94945, USA.
Saul KatoNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, USA.
Evan H FeinbergNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Anatomy, University of California, San Francisco, San Francisco, CA 94158, USA.
Kevin J BenderNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Neurology, University of California, San Francisco, San Francisco, CA 94158, USA.
Zachary A KnightDepartment of Physiology, University of California, San Francisco, San Francisco, CA 94158, USA; Neuroscience Graduate Program, University of California, San Francisco, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: zachary.knight@ucsf.edu.
Jennifer L GarrisonBuck Institute for Research on Aging, Novato, CA 94945, USA; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: jgarrison@buckinstitute.org.
University of California, San Francisco · USBuck Institute for Research on Aging · USHoward Hughes Medical Institute · US

Funding

ZIDOVUDINE &LAMIVUDINE &NEVIRAPINE COMBINATION THERAPY IN HIV 1 INFM01RR001271 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$22.7M
UCSF Nutrition Obesity Research CenterP30DK098722 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHRISTIAN VAISSE · 2015 to 2026
$14.6M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
Training Program in Neurodevelopmental DisabilitiesT32NS007413 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI AMELIA J EISCH, ERIC D MARSH · 1998 to 2026
$8.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Neural Dynamics Underlying FeedingR01DK106399 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Zachary A. Knight · 2015 to 2026
$4.8M
Neural mechanisms linking need to rewardRF1NS116626 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BERKE, JOSHUA D, KNIGHT, ZACHARY A. · 2020 to 2020
$2.7M
Cellular and Circuit Mechanisms of Neuropeptide SignalingR35GM119828 · NIGMS · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GARRISON, JENNIFER L · 2016 to 2021
$2.7M
Molecular and circuit mechanisms of antipsychoticsR01MH112729 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BENDER, KEVIN J, WHISTLER, JENNIFER L · 2017 to 2021
$2.6M
High-resolution neural circuit dissection with controllers locally affecting synaptic partners (CLASP)DP2MH119426 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FEINBERG, EVAN HARRIMAN · 2018 to 2018
$2.4M
Emergence of Functional Network Dynamics from Single Cell PropertiesR35GM124735 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KATO, SAUL S · 2017 to 2021
$1.9M
Sequencing Neural Circuits Controlling ThermoregulationDP2DK109533 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KNIGHT, ZACHARY A. · 2015 to 2015
$1.9M
Howard Hughes Medical InstituteNCRR NIH HHS M01 RR001271NIA NIH HHS F32 AG063488NIA NIH HHS T32 AG000266NIDA NIH HHS R01 DA035913NIDDK NIH HHS DP2 DK109533NIDDK NIH HHS P30 DK098722NIDDK NIH HHS R01 DK106399NIGMS NIH HHS R35 GM119828NIGMS NIH HHS R35 GM124735NIH HHS P40 OD010440NIH HHS S10 OD017993NIH HHS S10 OD021686NIMH NIH HHS DP2 MH119426NIMH NIH HHS R01 MH112729NIMH NIH HHS R21 MH112117NINDS NIH HHS R01 NS094781NINDS NIH HHS R01 NS109060NINDS NIH HHS RF1 NS116626NINDS NIH HHS T32 NS007413
6 · The paper itself

Abstract

Neuroscience relies on techniques for imaging the structure and dynamics of neural circuits, but the cell bodies of individual neurons are often obscured by overlapping fluorescence from axons and dendrites in surrounding neuropil. Here, we describe two strategies for using the ribosome to restrict the expression of fluorescent proteins to the neuronal soma. We show first that a ribosome-tethered nanobody can be used to trap GFP in the cell body, thereby enabling direct visualization of previously undetectable GFP fluorescence. We then design a ribosome-tethered GCaMP for imaging calcium dynamics. We show that this reporter faithfully tracks somatic calcium dynamics in the mouse brain while eliminating cross-talk between neurons caused by contaminating neuropil. In worms, this reporter enables whole-brain imaging with faster kinetics and brighter fluorescence than commonly used nuclear GCaMPs. These two approaches provide a general way to enhance the specificity of imaging in neurobiology.

Indexed as

AnimalsBrainCaenorhabditis elegansCalciumCalcium-Binding ProteinsCell BodyGreen Fluorescent ProteinsMiceNeuronsNeuropilOptical ImagingRibosomal Protein L10RibosomesSingle-Domain AntibodiesCalciumCalcium-Binding ProteinsGreen Fluorescent ProteinsSingle-Domain Antibodiescalcium imagingC. elegansGCaMPribo-GCaMPribosomal taggingsoma-targetingwhole-brain imaging

Identifiers

PMID32574560
PMCPMC7540731
OpenAlexW3036169778

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.