Evidence map›Paper›PMID 32574199›Full record

ArticlePloS one2020

Influence of analysis conditions for antimicrobial susceptibility test data on susceptibility rates.

Yasutoshi Hatsuda, Toshihiko Ishizaka, Naonori Koizumi, Yukako Yasui, Takako Saito, Syou Maki, Sachiko Omotani, Junji Mukai, Tomoya Tachi, Hitomi Teramachi and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yasutoshi HatsudaFaculty of Pharmacy, Osaka Ohtani University, Tondabayashi-shi, Osaka, Japan.ORCID 0000-0002-5419-9065
Toshihiko IshizakaSakai City Medical Center, Sakai-shi, Osaka, Japan.
Naonori KoizumiSakai City Medical Center, Sakai-shi, Osaka, Japan.
Yukako YasuiSakai City Medical Center, Sakai-shi, Osaka, Japan.
Takako SaitoSakai City Medical Center, Sakai-shi, Osaka, Japan.
Syou MakiFaculty of Pharmacy, Osaka Ohtani University, Tondabayashi-shi, Osaka, Japan.
Sachiko OmotaniFaculty of Pharmacy, Osaka Ohtani University, Tondabayashi-shi, Osaka, Japan.
Junji MukaiFaculty of Pharmacy, Osaka Ohtani University, Tondabayashi-shi, Osaka, Japan.
Tomoya TachiGifu Pharmaceutical University, Gifu-shi, Gifu, Japan.ORCID 0000-0002-5380-0218
Hitomi TeramachiGifu Pharmaceutical University, Gifu-shi, Gifu, Japan.
Michiaki MyotokuFaculty of Pharmacy, Osaka Ohtani University, Tondabayashi-shi, Osaka, Japan.
Osaka Ohtani University · JPSakai Municipal Hospital · JPGifu Pharmaceutical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo support effective antibiotic selection in empirical treatments, infection control interventions, and antimicrobial resistance containment strategies, many medical institutions collect antimicrobial susceptibility test data conducted at their facilities to prepare cumulative antibiograms.

aimTo evaluate how the setpoints of duplicate isolate removal period and data collection period affect the calculated susceptibility rates in antibiograms.

methodsThe Sakai City Medical Center is a regional core hospital for tertiary emergency medical care with 480 beds for general clinical care. In this study, all the Pseudomonas aeruginosa, Escherichia coli, and Klebsiella pneumoniae isolates collected at the Sakai City Medical Center Clinical Laboratory between July 2013 and December 2018 were subjected to antimicrobial susceptibility tests and the resulting data was analyzed.

findingsThe longer the duplicate isolate removal period, the fewer the isolates are available for every bacterial species. Differences in the length of the duplicate isolate removal period affected P. aeruginosa susceptibility rates to β-lactam antibiotics by up to 10.8%. The setpoint of the data collection period affected the antimicrobial susceptibility rates by up to 7.3%. We found that a significant change in susceptibility could be missed depending on the setting of the data collection period, in preparing antibiogram of β-lactam antibiotics for P. aeruginosa.

conclusionsWhen referring to antibiograms, medical professionals involved in infectious disease treatment should be aware that the parameter values, such as the duplicate isolate removal period and the data collection period, affect P. aeruginosa susceptibility rates especially to β-lactam antibiotics. And antibiogram should be updated within the shortest time period that is practically possible, taking into account restrictions such as numbers of specimen.

Indexed as

AlgorithmsAnti-Bacterial AgentsEmergency Service, HospitalEscherichia coliHospitalizationHumansKlebsiella pneumoniaeMicrobial Sensitivity TestsPseudomonas aeruginosaTertiary Care CentersTime FactorsAnti-Bacterial Agents

Identifiers

PMID32574199
PMCPMC7310835
OpenAlexW3036652713

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.