Evidence map›Paper›PMID 32573712›Full record

ArticleBlood2020

Association of aberrant ASNS imprinting with asparaginase sensitivity and chromosomal abnormality in childhood BCP-ALL.

Atsushi Watanabe, Kunio Miyake, Jessica Nordlund, Ann-Christine Syvänen, Louise van der Weyden, Hiroaki Honda, Norimasa Yamasaki, Akiko Nagamachi, Toshiya Inaba, Tomokatsu Ikawa and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Utility ofEpigenetics · 2023
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Tamoxifen resistance-related ceRNA network for breast cancer.Frontiers in cell and developmental biology · 2022
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 14 institutions in 3 countries.

Atsushi WatanabeDepartment of Pediatrics and.
Kunio MiyakeDepartment of Health Sciences, School of Medicine, University of Yamanashi, Yamanashi, Japan.
Jessica NordlundDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Ann-Christine SyvänenDepartment of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Louise van der WeydenExperimental Cancer Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, United Kingdom.
Hiroaki HondaField of Human Disease Models, Major in Advanced Life Sciences and Medicine, Institute of Laboratory Animals, Tokyo Women's Medical University, Tokyo, Japan.
Norimasa YamasakiDepartment of Molecular Oncology, Research Institute of Radiation Biology and Medicine, Hiroshima University, Hiroshima, Japan.
Akiko NagamachiDepartment of Molecular Oncology, Research Institute of Radiation Biology and Medicine, Hiroshima University, Hiroshima, Japan.
Toshiya InabaDepartment of Molecular Oncology, Research Institute of Radiation Biology and Medicine, Hiroshima University, Hiroshima, Japan.
Tomokatsu IkawaLaboratory for Immune Regeneration, RIKEN Center for Integrative Medical Sciences, Kanagawa, Japan.
Kevin Y UrayamaDepartment of Social Medicine and.
Nobutaka KiyokawaDepartment of Pediatric Hematology and Oncology Research, National Research Institute for Child Health and Development, Tokyo, Japan.
Akira OharaDepartment of Pediatrics, Toho University School of Medicine, Tokyo, Japan.
Shunsuke KimuraDepartment of Pediatrics, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Yasuo KubotaDepartment of Pediatrics, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Junko TakitaDepartment of Pediatrics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Hiroaki GotoHematology/Oncology and Regenerative Medicine, Kanagawa Children's Medical Center, Kanagawa, Japan.
Kimiyoshi SakaguchiDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Masayoshi MinegishiJapanese Red Cross Fukushima Blood Center, Fukushima, Japan; and.
Shotaro IwamotoDepartment of Pediatrics, Mie University Graduate School of Medicine, Tsu, Japan.
Tamao ShinoharaDepartment of Pediatrics and.
Keiko KagamiDepartment of Pediatrics and.
Masako AbeDepartment of Pediatrics and.
Koshi AkahaneDepartment of Pediatrics and.
Kumiko GoiDepartment of Pediatrics and.
Kanji SugitaDepartment of Pediatrics and.
Takeshi InukaiDepartment of Pediatrics and.
Hiroshima University · JPThe University of Tokyo · JPUppsala University · SEHamamatsu University School of Medicine · JPJapanese Red Cross Society, Japan · JPKanagawa Children's Medical Center · JPKyoto University · JPMie University · JPNational Center For Child Health and Development · JPToho University · JPTokyo University of Science · JPTokyo Women's Medical University · JPUniversity of Yamanashi · JPWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Karyotype is an important prognostic factor in childhood B-cell precursor acute lymphoblastic leukemia (BCP-ALL), but the underlying pharmacogenomics remain unknown. Asparaginase is an integral component in current chemotherapy for childhood BCP-ALL. Asparaginase therapy depletes serum asparagine. Normal hematopoietic cells can produce asparagine by asparagine synthetase (ASNS) activity, but ALL cells are unable to synthesize adequate amounts of asparagine. The ASNS gene has a typical CpG island in its promoter. Thus, methylation of the ASNS CpG island could be one of the epigenetic mechanisms for ASNS gene silencing in BCP-ALL. To gain deep insights into the pharmacogenomics of asparaginase therapy, we investigated the association of ASNS methylation status with asparaginase sensitivity. The ASNS CpG island is largely unmethylated in normal hematopoietic cells, but it is allele-specifically methylated in BCP-ALL cells. The ASNS gene is located at 7q21, an evolutionally conserved imprinted gene cluster. ASNS methylation in childhood BCP-ALL is associated with an aberrant methylation of the imprinted gene cluster at 7q21. Aberrant methylation of mouse Asns and a syntenic imprinted gene cluster is also confirmed in leukemic spleen samples from ETV6-RUNX1 knockin mice. In 3 childhood BCP-ALL cohorts, ASNS is highly methylated in BCP-ALL patients with favorable karyotypes but is mostly unmethylated in BCP-ALL patients with poor prognostic karyotypes. Higher ASNS methylation is associated with higher L-asparaginase sensitivity in BCP-ALL through lower ASNS gene and protein expression levels. These observations demonstrate that silencing of the ASNS gene as a result of aberrant imprinting is a pharmacogenetic mechanism for the leukemia-specific activity of asparaginase therapy in BCP-ALL.

Indexed as

AnimalsAsparaginaseAspartate-Ammonia LigaseChildChromosome AberrationsDNA MethylationGenomic ImprintingHumansMicePharmacogenomic VariantsPrecursor B-Cell Lymphoblastic Leukemia-LymphomaAsparaginaseAspartate-Ammonia Ligase

Identifiers

PMID32573712
PMCPMC7702480
OpenAlexW3037334708

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.