Evidence map›Paper›PMID 32572549›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Characterizing introgression-by-environment interactions using maize near isogenic lines.

Zhi Li, Sara B Tirado, Dnyaneshwar C Kadam, Lisa Coffey, Nathan D Miller, Edgar P Spalding, Aaron J Lorenz, Natalia de Leon, Shawn M Kaeppler, Patrick S Schnable and 2 more

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Zhi LiDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA.
Sara B TiradoDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA.
Dnyaneshwar C KadamDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA.
Lisa CoffeyDepartment of Agronomy, Iowa State University, 1111 WOI Rd, Ames, IA, 50011, USA.
Nathan D MillerDepartment of Botany, University of Wisconsin, 430 Lincoln Drive, Madison, WI, 53706, USA.
Edgar P SpaldingDepartment of Botany, University of Wisconsin, 430 Lincoln Drive, Madison, WI, 53706, USA.
Aaron J LorenzDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA.
Natalia de LeonDepartment of Agronomy, University of Wisconsin, 1575 Linden Drive, Madison, WI, 53706, USA.
Shawn M KaepplerDepartment of Agronomy, University of Wisconsin, 1575 Linden Drive, Madison, WI, 53706, USA.
Patrick S SchnableDepartment of Agronomy, Iowa State University, 1111 WOI Rd, Ames, IA, 50011, USA.
Nathan M SpringerDepartment of Plant and Microbial Biology, University of Minnesota, 1479 Gortner Avenue, Saint Paul, MN, 55108, USA.
Candice N HirschDepartment of Agronomy and Plant Genetics, University of Minnesota, 1991 Upper Buford Circle, Saint Paul, MN, 55108, USA. cnhirsch@umn.edu.ORCID http://orcid.org/0000-0002-8833-3023
University of Minnesota · USUniversity of Wisconsin–Madison · USIowa State University · US

Funding

Minnesota Agricultural Experiment Station 13-113Minnesota Corn Research and Promotion Council 4108-16SP
6 · The paper itself

Abstract

key messageSignificant introgression-by-environment interactions are observed for traits throughout development from small introgressed segments of the genome. Relatively small genomic introgressions containing quantitative trait loci can have significant impacts on the phenotype of an individual plant. However, the magnitude of phenotypic effects for the same introgression can vary quite substantially in different environments due to introgression-by-environment interactions. To study potential patterns of introgression-by-environment interactions, fifteen near-isogenic lines (NILs) with > 90% B73 genetic background and multiple Mo17 introgressions were grown in 16 different environments. These environments included five geographical locations with multiple planting dates and multiple planting densities. The phenotypic impact of the introgressions was evaluated for up to 26 traits that span different growth stages in each environment to assess introgression-by-environment interactions. Results from this study showed that small portions of the genome can drive significant genotype-by-environment interaction across a wide range of vegetative and reproductive traits, and the magnitude of the introgression-by-environment interaction varies across traits. Some introgressed segments were more prone to introgression-by-environment interaction than others when evaluating the interaction on a whole plant basis throughout developmental time, indicating variation in phenotypic plasticity throughout the genome. Understanding the profile of introgression-by-environment interaction in NILs is useful in consideration of how small introgressions of QTL or transgene containing regions might be expected to impact traits in diverse environments.

Indexed as

Gene-Environment InteractionGenome, PlantQuantitative Trait LociEnvironmentGenotypePhenotypeZea mays

Identifiers

PMID32572549
OpenAlexW3036373154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.