Evidence map›Paper›PMID 32572104›Full record

ArticleScientific reports2020

Expression regulation of MALATE SYNTHASE involved in glyoxylate cycle during protocorm development in Phalaenopsis aphrodite (Orchidaceae).

Wan-Lin Wu, Yu-Yun Hsiao, Hsiang-Chia Lu, Chieh-Kai Liang, Chih-Hsiung Fu, Tian-Hsiang Huang, Ming-Hsiang Chuang, Li-Jun Chen, Zhong-Jian Liu, Wen-Chieh Tsai

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Evaluation of protein's interaction and the regulatory network of some drought-responsive genes in Canola under drought and re-watering conditions.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  5. Article
  6. Unraveling the malate biosynthesis during development ofCurrent research in food science · 2022
    Article
  7. Hydro-Electro Hybrid Priming Promotes Carrot (International journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Wan-Lin Wu *Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation & Research Center of Shenzhen, Shenzhen, 518114, China.
Yu-Yun Hsiao *Orchid Research and Development Center, National Cheng Kung University, Tainan, Taiwan.
Hsiang-Chia LuInstitute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan.
Chieh-Kai LiangDepartment of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan.
Chih-Hsiung FuDepartment of Electrical Engineering, National Cheng Kung University, Tainan, 701, Taiwan.
Tian-Hsiang HuangCenter for Big Data Research, Kaohsiung Medical University, Kaohsiung, Taiwan.
Ming-Hsiang ChuangDepartment of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan.
Li-Jun ChenShenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation & Research Center of Shenzhen, Shenzhen, 518114, China.
Zhong-Jian LiuKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China. zjliu@fafu.edu.cn.
Wen-Chieh TsaiInstitute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan. tsaiwc@mail.ncku.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Orchid (Orchidaceae) is one of the largest families in angiosperms and presents exceptional diversity in lifestyle. Their unique reproductive characteristics of orchid are attracted by scientist for centuries. One of the synapomorphies of orchid plants is that their seeds do not contain endosperm. Lipids are used as major energy storage in orchid seeds. However, regulation and mobilization of lipid usage during early seedling (protocorm) stage of orchid is not understood. In this study, we compared transcriptomes from developing Phalaenopsis aphrodite protocorms grown on 1/2-strength MS medium with sucrose. The expression of P. aphrodite MALATE SYNTHASE (PaMLS), involved in the glyoxylate cycle, was significantly decreased from 4 days after incubation (DAI) to 7 DAI. On real-time RT-PCR, both P. aphrodite ISOCITRATE LYASE (PaICL) and PaMLS were down-regulated during protocorm development and suppressed by sucrose treatment. In addition, several genes encoding transcription factors regulating PaMLS expression were identified. A gene encoding homeobox transcription factor (named PaHB5) was involved in positive regulation of PaMLS. This study showed that sucrose regulates the glyoxylate cycle during orchid protocorm development in asymbiotic germination and provides new insights into the transcription factors involved in the regulation of malate synthase expression.

Indexed as

Carbohydrate MetabolismGene ExpressionGene Expression Regulation, PlantGerminationGlyoxylatesMalate SynthaseOrchidaceaeSeedlingsSeedsSymbiosisTranscription FactorsTranscriptomeGlyoxylatesglyoxylic acidMalate SynthaseTranscription Factors

Identifiers

PMID32572104
PMCPMC7308390

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.