Evidence map›Paper›PMID 32572023›Full record

ArticleTranslational psychiatry2020

The role of rare compound heterozygous events in autism spectrum disorder.

Bochao Danae Lin, Fabrice Colas, Isaac J Nijman, Jelena Medic, William Brands, Jeremy R Parr, Kristel R van Eijk, Sabine M Klauck, Andreas G Chiocchetti, Christine M Freitag and 12 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 15 institutions in 10 countries.

Bochao Danae LinDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Fabrice ColasDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-8134-8743
Isaac J NijmanDepartment of Medical Informatics, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Jelena MedicDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
William BrandsDepartment of Translational Neuroscience, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Jeremy R ParrInstitute of Neuroscience, Newcastle University, Newcastle, UK.
Kristel R van EijkDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Sabine M KlauckDivision of Molecular Genome Analysis and Division of Cancer Genome Research, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Andreas G ChiocchettiDepartment of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy, University Hospital Frankfurt, JW Goethe University Frankfurt, Frankfurt am Main, Germany.
Christine M FreitagDepartment of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy, University Hospital Frankfurt, JW Goethe University Frankfurt, Frankfurt am Main, Germany.ORCID http://orcid.org/0000-0001-9676-4782
Elena MaestriniDepartment of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.ORCID http://orcid.org/0000-0001-5924-3179
Elena BacchelliDepartment of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.
Hilary CoonDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Astrid VicenteInstituto Nacional de Saúde Doutor Ricardo Jorge, Avenida Padre Cruz, Lisboa, Portugal.ORCID http://orcid.org/0000-0001-7134-8037
Guiomar OliveiraCentro Hospitalar de Coimbra, Coimbra, Portugal.
Alistair T PagnamentaNIHR Oxford BRC, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-7334-0602
Louise GallagherNeuropsychiatric Genetics Research Group, Department of Psychiatry, Trinity College Dublin, Trinity Centre for Health Sciences, Dublin, Ireland.ORCID http://orcid.org/0000-0001-9462-2836
Sean EnnisAcademic Centre on Rare Diseases, School of Medicine and Medical Science, University College Dublin, Dublin, Ireland.
Richard AnneyMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Division of Psychological Medicine and Clinical Neurosciences, School of Medicine, Cardiff University, Cardiff, UK.
Thomas BourgeronHuman Genetics and Cognitive Functions, Institut Pasteur, UMR3571 CNRS, Université de Paris, Paris, France.
Jurjen J Luykx *Department of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Jacob Vorstman *Department of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands. jacob.vorstman@sickkids.ca.ORCID http://orcid.org/0000-0002-1677-3126
Utrecht University · NLGoethe University Frankfurt · DEUniversity of Bologna · ITCardiff University · GBCentre for Human Genetics · GBCentre National de la Recherche Scientifique · FRGerman Cancer Research Center · DEHenan University · CNHospitais da Universidade de Coimbra · PTNational Institute of Health Dr. Ricardo Jorge · PTNewcastle University · GBTrinity College Dublin · IEUniversity College Dublin · IEUniversity of Toronto · CAUniversity of Utah · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of genetic variants underlying autism spectrum disorders (ASDs) may contribute to a better understanding of their underlying biology. To examine the possible role of a specific type of compound heterozygosity in ASD, namely, the occurrence of a deletion together with a functional nucleotide variant on the remaining allele, we sequenced 550 genes in 149 individuals with ASD and their deletion-transmitting parents. This approach allowed us to identify additional sequence variants occurring in the remaining allele of the deletion. Our main goal was to compare the rate of sequence variants in remaining alleles of deleted regions between probands and the deletion-transmitting parents. We also examined the predicted functional effect of the identified variants using Combined Annotation-Dependent Depletion (CADD) scores. The single nucleotide variant-deletion co-occurrence was observed in 13.4% of probands, compared with 8.1% of parents. The cumulative burden of sequence variants (n = 68) in pooled proband sequences was higher than the burden in pooled sequences from the deletion-transmitting parents (n = 41, X

Indexed as

Autism Spectrum DisorderAllelesDNA Copy Number VariationsGenetic Predisposition to DiseaseHumans

Identifiers

PMID32572023
PMCPMC7308334
OpenAlexW3036183914

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.