Evidence map›Paper›PMID 32571944›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold.

Keiji Fushimi, Masumi Hasegawa, Takeru Ito, Nathan C Rockwell, Gen Enomoto, Ni-Ni -Win, J Clark Lagarias, Masahiko Ikeuchi, Rei Narikawa

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Discovery and Engineering of Unique Cyanobacteriochrome GAF Domains.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Article
  3. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  4. Article
  5. Article
  6. Novel cyanobacteriochrome photoreceptor with the second Cys residue showing atypical orange/blue reversible photoconversion.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  7. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  8. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Keiji FushimiDepartment of Biological Science, Faculty of Science, Shizuoka University, Suruga, Shizuoka 422-8529, Japan; fushimi.keiji@shizuoka.ac.jp narikawa.rei@shizuoka.ac.jp.
Masumi HasegawaDepartment of Biological Science, Faculty of Science, Shizuoka University, Suruga, Shizuoka 422-8529, Japan.
Takeru ItoDepartment of Biological Science, Faculty of Science, Shizuoka University, Suruga, Shizuoka 422-8529, Japan.
Nathan C RockwellDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616.
Gen EnomotoCore Research for Evolutional Science and Technology, Japan Science and Technology Agency, Kawaguchi, Saitama 332-0012, Japan.
Ni-Ni -WinGraduate School of Arts and Sciences, University of Tokyo, Meguro, Tokyo 153-8902, Japan.
J Clark LagariasDepartment of Molecular and Cellular Biology, University of California, Davis, CA 95616.ORCID 0000-0002-2093-0403
Masahiko IkeuchiCore Research for Evolutional Science and Technology, Japan Science and Technology Agency, Kawaguchi, Saitama 332-0012, Japan.
Rei NarikawaDepartment of Biological Science, Faculty of Science, Shizuoka University, Suruga, Shizuoka 422-8529, Japan; fushimi.keiji@shizuoka.ac.jp narikawa.rei@shizuoka.ac.jp.ORCID 0000-0001-7891-3510
Shizuoka University · JPTokyo University of the Arts · JPUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteriochromes (CBCRs) are small, bistable linear tetrapyrrole (bilin)-binding light sensors which are typically found as modular components in multidomain cyanobacterial signaling proteins. The CBCR family has been categorized into many lineages that roughly correlate with their spectral diversity, but CBCRs possessing a conserved DXCF motif are found in multiple lineages. DXCF CBCRs typically possess two conserved Cys residues: a first Cys that remains ligated to the bilin chromophore and a second Cys found in the DXCF motif. The second Cys often forms a second thioether linkage, providing a mechanism to sense blue and violet light. DXCF CBCRs have been described with blue/green, blue/orange, blue/teal, and green/teal photocycles, and the molecular basis for some of this spectral diversity has been well established. We here characterize AM1_1499g1, an atypical DXCF CBCR that lacks the second cysteine residue and exhibits an orange/green photocycle. Based on prior studies of CBCR spectral tuning, we have successfully engineered seven AM1_1499g1 variants that exhibit robust yellow/teal, green/teal, blue/teal, orange/yellow, yellow/green, green/green, and blue/green photocycles. The remarkable spectral diversity generated by modification of a single CBCR provides a good template for multiplexing synthetic photobiology systems within the same cellular context, thereby bypassing the time-consuming empirical optimization process needed for multiple probes with different protein scaffolds.

Indexed as

Evolution, MolecularLightBacterial ProteinsColorCyanobacteriaMutagenesis, Site-DirectedNostocPhotobiologyPhotoreceptors, MicrobialSynthetic BiologyTetrapyrrolesBacterial ProteinsPhotoreceptors, MicrobialTetrapyrrolescircular dichroismoptogeneticsphytochrome

Identifiers

PMID32571944
PMCPMC7354995
OpenAlexW3037736117

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.