Evidence map›Paper›PMID 32571220›Full record

ArticleBMC infectious diseases2020

Towards accurate exclusion of neonatal bacterial meningitis: a feasibility study of a novel 16S rDNA PCR assay.

Arthur Abelian, Thomas Mund, Martin D Curran, Stuart A Savill, Nipa Mitra, Carol Charan, Amanda L Ogilvy-Stuart, Hugh R B Pelham, Paul H Dear

Abstract read
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Arthur AbelianDepartment of Paediatrics, Maelor Hospital, Betsi Cadwaladr University LHB, 12 Fleming Drive, Wrexham, LL11 2BP, UK. abelartur@doctors.org.uk.ORCID http://orcid.org/0000-0002-9287-6135
Thomas MundMRC Laboratory of Molecular Biology, Cambridge, UK.
Martin D CurranClinical Microbiology, Public Health England, Addenbrookes Hospital, Cambridge, UK.
Stuart A SavillNorth Wales Clinical Research Centre, Betsi Cadwaladr University LHB, Wrexham, UK.
Nipa MitraRosie Hospital, Cambridge, UK.
Carol CharanRosie Hospital, Cambridge, UK.
Amanda L Ogilvy-StuartRosie Hospital, Cambridge, UK.
Hugh R B PelhamMRC Laboratory of Molecular Biology, Cambridge, UK.
Paul H DearMote Research Ltd., Babraham, Cambridge, UK.

Funding

Medical Research Council Block grant
6 · The paper itself

Abstract

backgroundPCRctic is an innovative assay based on 16S rDNA PCR technology that has been designed to detect a single intact bacterium in a specimen of cerebro-spinal fluid (CSF). The assay's potential for accurate, fast and inexpensive discrimination of bacteria-free CSF makes it an ideal adjunct for confident exclusion of bacterial meningitis in newborn babies where the negative predictive value of bacterial culture is poor. This study aimed to stress-test and optimize PCRctic in the "field conditions" to attain a clinically useful level of specificity.

methodsThe specificity of PCRctic was evaluated in CSF obtained from newborn babies investigated for meningitis on a tertiary neonatal unit. Following an interim analysis, the method of skin antisepsis was changed to increase bactericidal effect, and snap-top tubes (Eppendorf™) replaced standard universal containers for collection of CSF to reduce environmental contamination.

resultsThe assay's specificity was 90.5% in CSF collected into the snap-top tubes - up from 60% in CSF in the universal containers. The method of skin antisepsis had no effect on the specificity. All CSF cultures were negative and no clinical cases of neonatal bacterial meningitis occurred during the study.

conclusionsA simple and inexpensive optimization of CSF collection resulted in a high specificity output. The low prevalence of neonatal bacterial meningitis means that a large multi-centre study will be required to validate the assay's sensitivity and its negative predictive value.

Indexed as

BacteriaCerebrospinal FluidDNA, RibosomalFeasibility StudiesHumansInfant, NewbornInfant, Newborn, DiseasesMeningitis, BacterialPolymerase Chain ReactionSensitivity and SpecificityDNA, RibosomalBroad-range PCREthidium monoazideNeonatal bacterial meningitis

Identifiers

PMID32571220
PMCPMC7310343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.