Evidence map›Paper›PMID 32567837›Full record

ArticleBiochemistry2020

Nucleosome Binding by the Lysine Specific Demethylase 1 (LSD1) Enzyme Enables Histone H3 Demethylation.

Abhinav Dhall, Patrick M M Shelton, Aurore M-F Delachat, Calvin J A Leonen, Beat Fierz, Champak Chatterjee

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Abhinav DhallDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.
Patrick M M SheltonDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.
Aurore M-F DelachatInstitut des sciences et ingénierie chimiques (ISIC), Ecole polytechnique fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
Calvin J A LeonenDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.
Beat FierzInstitut des sciences et ingénierie chimiques (ISIC), Ecole polytechnique fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.ORCID 0000-0002-2991-3044
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0001-5772-4438
University of Washington · USÉcole Polytechnique Fédérale de Lausanne · CH

Funding

Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
NIGMS NIH HHS R01 GM110430
6 · The paper itself

Abstract

The essential human enzyme lysine specific demethylase 1 (LSD1) silences genes by demethylating mono- and dimethylated lysine 4 in histone H3 (H3K4me1/2). Studies of the minimal requirements for LSD1 activity are complicated by the heterogeneity of histone modification states in cells. We overcame this challenge by generating homogeneous mononucleosome substrates containing semisynthetic H3K4me2. Biophysical and biochemical assays with full-length LSD1 revealed its ability to bind and demethylate nucleosomes. Consistent with a requirement for nucleosome binding prior to demethylation, a competing nucleosome-binding peptide from the high-mobility group protein effectively inhibited LSD1 activity. Thus, our studies provide the first glimpse of nucleosome demethylation by LSD1 in the absence of other scaffolding proteins.

Indexed as

Protein Processing, Post-TranslationalHistone DemethylasesHistonesHumansLysineMethylationModels, MolecularNucleosomesProtein BindingHistone DemethylasesHistonesKDM1A protein, humanLysineNucleosomes

Identifiers

PMID32567837
PMCPMC7640899
OpenAlexW3036241141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.