SARS-CoV-2 and co-infections detection in nasopharyngeal throat swabs of COVID-19 patients by metagenomics.

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

1. Viral genomic, metagenomic and human transcriptomic characterization and prediction of the clinical forms of COVID-19.PLoS pathogens · 2021
   Trial
2. Cross- Wellcome Africa Asian Programmes (AAPs) Acceleration of Genomics for Escalating infectious Diseases, (CAGED) Consortium.Wellcome open research · 2026
   Article
3. Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection.Genome medicine · 2025
   Article
4. Characterization of Firmiana danxiaensis plastomes and comparative analysis of Firmiana: insight into its phylogeny and evolution.BMC genomics · 2024
   Article
5. Agnostic Sequencing for Detection of Viral Pathogens.Clinical microbiology reviews · 2023
   Review
6. The Safety of Cold-Chain Food in Post-COVID-19 Pandemic: Precaution and Quarantine.Foods (Basel, Switzerland) · 2022
   Review
7. Mapping COVID-19 related research from Vietnam: a scoping review.Journal of preventive medicine and hygiene · 2022
   Article
8. Viral metagenomics in nasopharyngeal swabs of Brazilian patients negative for SARS-CoV-2 unveils the presence of Chikungunya virus infection.The Journal of infection · 2022
   Article
9. Molecular characterization of a new SARS-CoV-2 recombinant cluster XAG identified in Brazil.Frontiers in medicine · 2022
   Article
10. A metagenomics workflow for SARS-CoV-2 identification, co-pathogen detection, and overall diversity.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2021
    Article
11. High-Throughput Next-Generation Sequencing Respiratory Viral Panel: A Diagnostic and Epidemiologic Tool for SARS-CoV-2 and Other Viruses.Viruses · 2021
    Article
12. Bioinformatics Accelerates the Major Tetrad: A Real Boost for the Pharmaceutical Industry.International journal of molecular sciences · 2021
    Review
13. Diagnostics for SARS-CoV-2 infections.Nature materials · 2021
    Review
14. Genotyping of the Major SARS-CoV-2 Clade by Short-Amplicon High-Resolution Melting (SA-HRM) Analysis.Genes · 2021
    Article
15. Food Safety in Post-COVID-19 Pandemic: Challenges and Countermeasures.Biosensors · 2021
    Review
16. Considerations for diagnostic COVID-19 tests.Nature reviews. Microbiology · 2021
    Review
17. Essential interpretations of bioinformatics in COVID-19 pandemic.Meta gene · 2021
    Review
18. Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing.The Journal of infection · 2021
    Article
19. COVID-19 diagnostic testing: Technology perspective.Clinical and translational medicine · 2020
    Article
20. Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.PloS one · 2020
    Article

Corrections and comments

• Commented on by
  Viral metagenomics in nasopharyngeal swabs of Brazilian patients negative for SARS-CoV-2 unveils the presence of Chikungunya virus infection.2022
• Comment on
  Co-infections in people with COVID-19: a systematic review and meta-analysis.2020

Authors and funding

23 authors at 4 institutions in 2 countries.

Funding

Abstract

PubMed holds no abstract for this paper.

Indexed as