Evidence map›Paper›PMID 32562062›Full record

ArticleWorld journal of microbiology & biotechnology2020

A transcriptome analysis of the antibacterial mechanism of flavonoids from Sedum aizoon L. against Shewanella putrefaciens.

Jing Wang, Zongyu Chi, Ke Zhao, Hongfei Wang, Xin Zhang, Feng Xu, Xingfeng Shao, Yingying Wei

Abstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Research Progress Regarding PsychrotrophicFoods (Basel, Switzerland) · 2025
    Review
  4. Article
  5. Frontiers in pharmacology · 2024
    Review
  6. Article
  7. Anthocyanins fromFrontiers in microbiology · 2023
    Article
  8. To explore the active constituents ofAnnals of translational medicine · 2022
    Article
  9. Article
  10. The regulatory effect of total flavonoids ofCurrent research in food science · 2022
    Article
  11. Article
  12. Anti-fungal Activity ofFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jing WangDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Zongyu ChiDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Ke ZhaoDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Hongfei WangDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China. wanghongfei@nbu.edu.cn.ORCID http://orcid.org/0000-0001-7056-9575
Xin ZhangDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China. zhangxin@nbu.edu.cn.
Feng XuDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Xingfeng ShaoDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Yingying WeiDepartment of Food Science and Engineering, College of Food and Pharmaceutical Science, Ningbo University, Ningbo, 315211, Zhejiang, People's Republic of China.
Ningbo University · CN

Funding

Key Research and Development Projects of Zhejiang Province 2017C02021Natural Science Foundation of Ningbo City 2015A610273Natural Science Foundation of Zhejiang Province LY16C200003Public Welfare Project of Zhejiang Province LGN19C200012
6 · The paper itself

Abstract

Flavonoids from Sedum aizoon L. (FSAL) possess prominent antibacterial activity against Shewanella putrefaciens isolated from sea food. In the current study, the involved molecular mechanisms were investigated using transcriptome analyses combined with bioinformatics analysis in vitro for the first time. Results showed that treatment of FSAL (1.0 MIC) damaged the permeability and integrity of cell membrane and induced 721 differentially expressed genes (DEGs) in tested bacteria at transcriptional levels, including 107 DEGs were up-regulated and 614 DEGs were down-regulated. In addition, the RNA-Seq analysis revealed that the majority of DEGs mainly involved in pathways of lipopolysaccharide biosynthesis, glycerophospholipid metabolism, biosynthesis of amino acids, purine metabolism, ABC transporters and response to stimulus. In summary, the integrated results indicated that the intervention of FSAL induced destruction of cell wall and membrane, disorder of the metabolic process and redox balance, and damage of nucleic acids in S. putrefaciens, at last resulted in the death of cells. This study provided new insights into the anti- S. putrefaciens molecular mechanism underlying the treatment of FSAL, which may be served as the basis guide for identifying potential antimicrobial targets and application of FSAL in food safety.

Indexed as

Gene Expression ProfilingAnti-Bacterial AgentsCell MembraneDNA RepairDNA ReplicationFlavonoidsGene LibraryMetabolic Networks and PathwaysPlant ExtractsReactive Oxygen SpeciesSeafoodSedumSequence Analysis, RNAShewanella putrefaciensAnti-Bacterial AgentsFlavonoidsPlant ExtractsReactive Oxygen SpeciesAntibacterial mechanismFlavonoids from sedum aizoon l. (FSAL)Shewanella putrefaciensTranscriptome

Identifiers

PMID32562062
OpenAlexW3036039592

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.