Evidence map›Paper›PMID 32561885›Full record

ArticleCommunications biology2020

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation.

Connor J Cooper, Kaiyuan Zheng, Katherine W Rush, Alexander Johs, Brian C Sanders, Georgios A Pavlopoulos, Nikos C Kyrpides, Mircea Podar, Sergey Ovchinnikov, Stephen W Ragsdale and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. S-adenosyl-L-methionine is the unexpected methyl donor for the methylation of mercury by the membrane-associated HgcAB complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. The origin of methyl group in methanogen-mediated mercury methylation: From the Wolfe cycle.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Recent advance of microbial mercury methylation in the environment.Applied microbiology and biotechnology · 2024
    Review
  7. Review
  8. Transcriptional Control ofApplied and environmental microbiology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Expression Levels ofEnvironmental science & technology · 2022
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Connor J CooperGraduate School of Genome Science and Technology, University of Tennessee, F225 Walters Life Science, Knoxville, TN, 37996, USA.ORCID http://orcid.org/0000-0002-5527-9948
Kaiyuan ZhengDepartment of Biological Chemistry, University of Michigan Medical School, 1150 West Medical Center Drive, Ann Arbor, MI, 48109-0606, USA.ORCID http://orcid.org/0000-0002-9599-3679
Katherine W RushDepartment of Biological Chemistry, University of Michigan Medical School, 1150 West Medical Center Drive, Ann Arbor, MI, 48109-0606, USA.ORCID http://orcid.org/0000-0001-6842-9055
Alexander JohsEnvironmental Sciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN, 37831-6038, USA.ORCID http://orcid.org/0000-0003-0098-2254
Brian C SandersBiosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN, 37831-6038, USA.ORCID http://orcid.org/0000-0001-9754-1687
Georgios A PavlopoulosDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-4577-8276
Nikos C KyrpidesDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-6131-0462
Mircea PodarGraduate School of Genome Science and Technology, University of Tennessee, F225 Walters Life Science, Knoxville, TN, 37996, USA.ORCID http://orcid.org/0000-0003-2776-0205
Sergey OvchinnikovJohn Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA, 02138, USA.ORCID http://orcid.org/0000-0003-2774-2744
Stephen W RagsdaleDepartment of Biological Chemistry, University of Michigan Medical School, 1150 West Medical Center Drive, Ann Arbor, MI, 48109-0606, USA.ORCID http://orcid.org/0000-0003-3938-8906
Jerry M ParksGraduate School of Genome Science and Technology, University of Tennessee, F225 Walters Life Science, Knoxville, TN, 37996, USA. parksjm@ornl.gov.ORCID http://orcid.org/0000-0002-3103-9333
Oak Ridge National Laboratory · USUniversity of Michigan · USLawrence Berkeley National Laboratory · USHarvard University Press · US

Funding

Exploring the unknown protein universe using evolutionary informationDP5OD026389 · OD · HARVARD UNIVERSITY · PI OVCHINNIKOV, SERGEY L. · 2018 to 2022
$2.0M
Biochemical Mechanism of Mercury MethylationR01GM124174 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGSDALE, STEPHEN WILEY · 2018 to 2021
$877k
6 · The paper itself

Abstract

Bacteria and archaea possessing the hgcAB gene pair methylate inorganic mercury (Hg) to form highly toxic methylmercury. HgcA consists of a corrinoid binding domain and a transmembrane domain, and HgcB is a dicluster ferredoxin. However, their detailed structure and function have not been thoroughly characterized. We modeled the HgcAB complex by combining metagenome sequence data mining, coevolution analysis, and Rosetta structure calculations. In addition, we overexpressed HgcA and HgcB in Escherichia coli, confirmed spectroscopically that they bind cobalamin and [4Fe-4S] clusters, respectively, and incorporated these cofactors into the structural model. Surprisingly, the two domains of HgcA do not interact with each other, but HgcB forms extensive contacts with both domains. The model suggests that conserved cysteines in HgcB are involved in shuttling Hg

Indexed as

Bacterial ProteinsCorrinoidsDesulfovibrio desulfuricansMercuryMetagenomeMethylationModels, MolecularMultiprotein ComplexesPhylogenyProtein ConformationProtein DomainsSpectrophotometry, UltravioletBacterial ProteinsCorrinoidsMercuryMultiprotein Complexes

Identifiers

PMID32561885
PMCPMC7305189
OpenAlexW3036114501

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.