Evidence map›Paper›PMID 32561858›Full record

ArticleCell research2020

A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling.

Junbin Qian, Siel Olbrecht, Bram Boeckx, Hanne Vos, Damya Laoui, Emre Etlioglu, Els Wauters, Valentina Pomella, Sara Verbandt, Pieter Busschaert and 14 more

Abstract read
In one paragraph

Article in Cell research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 504 papers.

0numbers the graph read from it
0cells of the map it votes in
504citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

504 citing papers in PubMed.

  1. 4-1BBCell reports. Medicine · 2025
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444 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Junbin QianVIB Center for Cancer Biology, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6145-045X
Siel OlbrechtVIB Center for Cancer Biology, Leuven, Belgium.
Bram BoeckxVIB Center for Cancer Biology, Leuven, Belgium.
Hanne VosDepartment of Oncology, KU Leuven, Surgical Oncology, University Hospitals Leuven, Leuven, Belgium.
Damya LaouiLab of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Brussels, Belgium.
Emre EtliogluLaboratory of Molecular Digestive Oncology, Department of Oncology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0003-4267-1307
Els WautersRespiratory Oncology Unit (Pneumology) and Leuven Lung Cancer Group, University Hospital KU Leuven, Leuven, Belgium.
Valentina PomellaLaboratory of Molecular Digestive Oncology, Department of Oncology, KU Leuven, Leuven, Belgium.
Sara VerbandtLaboratory of Molecular Digestive Oncology, Department of Oncology, KU Leuven, Leuven, Belgium.
Pieter BusschaertDepartment of Obstetrics and Gynaecology, University Hospitals Leuven, Leuven, Belgium.
Ayse BassezVIB Center for Cancer Biology, Leuven, Belgium.
Amelie FrankenVIB Center for Cancer Biology, Leuven, Belgium.
Marlies Vanden BemptVIB Center for Cancer Biology, Leuven, Belgium.
Jieyi XiongVIB Center for Cancer Biology, Leuven, Belgium.
Birgit WeynandDepartment of Imaging and Pathology, Laboratory of Translational Cell & Tissue Research and University Hospitals Leuven, Department of Pathology, KU Leuven-University of Leuven, B-3000, Leuven, Belgium.
Yannick van HerckLaboratory of Experimental Oncology, KU Leuven, Leuven, Belgium.
Asier AntoranzDepartment of Imaging and Pathology, Laboratory of Translational Cell & Tissue Research and University Hospitals Leuven, Department of Pathology, KU Leuven-University of Leuven, B-3000, Leuven, Belgium.
Francesca Maria BosisioDepartment of Imaging and Pathology, Laboratory of Translational Cell & Tissue Research and University Hospitals Leuven, Department of Pathology, KU Leuven-University of Leuven, B-3000, Leuven, Belgium.
Bernard ThienpontLaboratory for Functional Epigenetics, Department of Human Genetics, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-8772-6845
Giuseppe FlorisDepartment of Imaging and Pathology, Laboratory of Translational Cell & Tissue Research and University Hospitals Leuven, Department of Pathology, KU Leuven-University of Leuven, B-3000, Leuven, Belgium.
Ignace VergoteDepartment of Obstetrics and Gynaecology, University Hospitals Leuven, Leuven, Belgium.
Ann SmeetsDepartment of Oncology, KU Leuven, Surgical Oncology, University Hospitals Leuven, Leuven, Belgium.
Sabine TejparLaboratory of Molecular Digestive Oncology, Department of Oncology, KU Leuven, Leuven, Belgium.
Diether LambrechtsVIB Center for Cancer Biology, Leuven, Belgium. Diether.Lambrechts@kuleuven.vib.be.ORCID http://orcid.org/0000-0002-3429-302X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The stromal compartment of the tumor microenvironment consists of a heterogeneous set of tissue-resident and tumor-infiltrating cells, which are profoundly moulded by cancer cells. An outstanding question is to what extent this heterogeneity is similar between cancers affecting different organs. Here, we profile 233,591 single cells from patients with lung, colorectal, ovary and breast cancer (n = 36) and construct a pan-cancer blueprint of stromal cell heterogeneity using different single-cell RNA and protein-based technologies. We identify 68 stromal cell populations, of which 46 are shared between cancer types and 22 are unique. We also characterise each population phenotypically by highlighting its marker genes, transcription factors, metabolic activities and tissue-specific expression differences. Resident cell types are characterised by substantial tissue specificity, while tumor-infiltrating cell types are largely shared across cancer types. Finally, by applying the blueprint to melanoma tumors treated with checkpoint immunotherapy and identifying a naïve CD4

Indexed as

RNA-SeqSingle-Cell AnalysisTumor MicroenvironmentB-LymphocytesCell DifferentiationDendritic CellsEndothelial CellsFibroblastsGene Expression Regulation, NeoplasticHumansKiller Cells, NaturalMacrophagesMonocytesNeoplasmsOrgan SpecificityPhenotype

Identifiers

PMID32561858
PMCPMC7608385

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.