ArticleScientific reports2020
Construction of a high density linkage map in Oil Palm using SPET markers.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- A comprehensive SPET-based linkage mapping for berry texture and defective seed development in grapevine.Frontiers in plant science · 2026Article
- Association analyses reveal both anthropic and environmental selective events during eggplant domestication.The Plant journal : for cell and molecular biology · 2025Article
- Article
- Development and application of Single Primer Enrichment Technology (SPET) SNP assay for population genomics analysis and candidate gene discovery in lettuce.Frontiers in plant science · 2023Article
- Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations.Journal of applied genetics · 2022Article
- Genetic dissection of fruit maturity date in apricot (P. armeniaca L.) through a Single Primer Enrichment Technology (SPET) approach.BMC genomics · 2022Article
- Targeted genome-wide SNP genotyping in feral horses using non-invasive fecal swabs.Conservation genetics resources · 2022Article
- Newly Developed MAGIC Population Allows Identification of Strong Associations and Candidate Genes for Anthocyanin Pigmentation in Eggplant.Frontiers in plant science · 2022Article
- Molecular approaches for improving oil palm for oil.Molecular breeding : new strategies in plant improvement · 2021Review
- Oil palm in the 2020s and beyond: challenges and solutions.CABI agriculture and bioscience · 2021Review
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A high-density genetic linkage map from a controlled cross of two oil palm (Elaeis guineensis) genotypes was constructed based on Single Primer Enrichment Technology (SPET) markers. A 5K panel of hybridization probes were used for this purpose which was derived from previously developed SNP primers in oil palm. Initially, 13,384 SNPs were detected which were reduced to 13,073 SNPs after filtering for only bi-allelic SNP. Around 75% of the markers were found to be monomorphic in the progeny, reducing the markers left for linkage mapping to 3,501. Using Lep-MAP3 software, a linkage map was constructed which contained initially 2,388 markers and had a total length of 1,370 cM. In many cases several adjacent SNP were located on the same locus, due to missing recombination events between them, leading to a total of 1,054 loci on the 16 LG. Nevertheless, the marker density of 1.74 markers per cM (0.57 cM/marker) should allow the detection of QTLs in the future. This study shows that cost efficient SPET markers are suitable for linkage map construction in oil palm and probably, also in other species.
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Registered trials
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