ArticleScientific data2020
Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis.
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 17 citations in OpenAlex.
- Comparative study of renal filtration barrier structure and key gene expression between Lepus yarkandensis and Oryctolagus cuniculus.Experimental animals · 2026Article
- Genome-Wide Identification of Candidate Genes Associated with Antler Weight in Tahe Red Deer.Animals : an open access journal from MDPI · 2026Article
- A telomere-to-telomere genome assembly of Chinese water deer (Hydropotes inermis).Scientific data · 2026Article
- A reference-grade genome assembly data of sika deer in Hokkaido, Japan,Data in brief · 2026Article
- A comprehensive ruminant microbial catalog (CRMC) reveals convergent selection for key vitamin-synthesizing pathways and genes across ruminants and human.GigaScience · 2026Article
- Seasonal Dietary Patterns of Tarim Red Deer (Ecology and evolution · 2025Article
- Draft genome of the endangered visayan spotted deer (GigaByte (Hong Kong, China) · 2025Article
- Comparative studies of X chromosomes in Cervidae family.Scientific reports · 2023Article
- Haplotype-resolved Genome of Sika Deer Reveals Allele-specific Gene Expression and Chromosome Evolution.Genomics, proteomics & bioinformatics · 2023Article
- A chromosome-level genome assembly reveals genomic characteristics of the American mink (Neogale vison).Communications biology · 2022Article
- Current Situation and Utilization of Velvet Deer Germplasm Resources in China.Animals : an open access journal from MDPI · 2022Review
- Calreticulin Identified as One of the Androgen Response Genes That Trigger Full Regeneration of the Only Capable Mammalian Organ, the Deer Antler.Frontiers in cell and developmental biology · 2022Article
- Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps).The Journal of heredity · 2021Article
- Genomics of Adaptations in Ungulates.Animals : an open access journal from MDPI · 2021Review
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Authors and funding
10 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tarim red deer (Cervus elaphus yarkandensis) is the only subspecies of red deer (of 22 subspecies) from Central Asia. This species is a desert dweller of the Tarim Basin of southern Xinjiang, China, and exhibits some unique adaptations to the dry and extreme hot climate. We report here the assembly of a Tarim red deer genome employing a 10X Genomics library, termed CEY_v1. Our genome consisted of 2.6 Gb with contig N50 and scaffold N50 of 275.5 Kb and 31.7 Mb, respectively. Around 96% of the assembled sequences were anchored onto 34 chromosomes based on the published high-quality red deer genetic linkage map. More than 94% BUSCOs complete genes (including 90.5% single and 3.6% duplicated ones) were detected in the CEY_v1 and 20,653 genes were annotated. The CEY_v1 is expected to contribute to comparative analysis of genome biology, to evolutionary studies within Cervidae, and to facilitating investigation of mechanisms underlying adaptation of this species to the extreme dry and hot climate.
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