Evidence map›Paper›PMID 32561747›Full record

ArticleNature communications2020

Structural basis of host protein hijacking in human T-cell leukemia virus integration.

Veer Bhatt, Ke Shi, Daniel J Salamango, Nicholas H Moeller, Krishan K Pandey, Sibes Bera, Heather O Bohl, Fredy Kurniawan, Kayo Orellana, Wei Zhang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
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  7. Structural insights into PPP2R5A degradation by HIV-1 Vif.Nature structural & molecular biology · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Structure and function of retroviral integrase.Nature reviews. Microbiology · 2022
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Veer Bhatt *The Hormel Institute, University of Minnesota, 801 16th Avenue N.E., Austin, MN, 55912, USA.ORCID http://orcid.org/0000-0001-9385-3843
Ke Shi *Masonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Daniel J Salamango *Masonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Nicholas H MoellerMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Krishan K PandeyDepartment of Molecular Microbiology and Immunology, Saint Louis University, 1100 S. Grand Boulevard, St. Louis, MO, 63104, USA.
Sibes BeraDepartment of Molecular Microbiology and Immunology, Saint Louis University, 1100 S. Grand Boulevard, St. Louis, MO, 63104, USA.
Heather O BohlMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.ORCID http://orcid.org/0000-0003-0910-7456
Fredy KurniawanMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Kayo OrellanaMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Wei ZhangMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.
Duane P GrandgenettDepartment of Molecular Microbiology and Immunology, Saint Louis University, 1100 S. Grand Boulevard, St. Louis, MO, 63104, USA.
Reuben S HarrisMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA.ORCID http://orcid.org/0000-0002-9034-9112
Anna C Sundborger-LunnaThe Hormel Institute, University of Minnesota, 801 16th Avenue N.E., Austin, MN, 55912, USA. asundbor@umn.edu.ORCID http://orcid.org/0000-0003-4696-7543
Hideki AiharaMasonic Cancer Center, University of Minnesota, 2231 6th Street S.E., Minneapolis, MN, 55455, USA. aihar001@umn.edu.ORCID http://orcid.org/0000-0001-7508-6230
University of Minnesota · USSaint Louis University · US

Funding

Structural studies of viral replication and invasionR35GM118047 · NIGMS · UNIVERSITY OF MINNESOTA · PI Hideki Aihara · 2016 to 2026
$6.3M
APOBEC3 Proteins in HIV RestrictionR37AI064046 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HARRIS, REUBEN S · 2015 to 2024
$4.2M
APOBEC proteins and uracil in retrovirus restrictionR01AI064046 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HARRIS, REUBEN S · 2005 to 2014
$3.0M
APOBEC3 Proteins in HIV RestrictionR56AI064046 · NIAID · UNIVERSITY OF MINNESOTA · PI HARRIS, REUBEN S · 2010 to 2010
$524k
Asymmetric flow FFF and Composition Gradient/Light Scattering SystemS10RR023748 · NCRR · YALE UNIVERSITY · PI FOLTA-STOGNIEW, EWA JOANNA · 2007 to 2007
$271k
The Vif-APOBEC NexusK99AI147811 · NIAID · UNIVERSITY OF MINNESOTA · PI SALAMANGO, DANIEL JAMES · 2019 to 2020
$238k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR023748NIAID NIH HHS K99 AI147811NIAID NIH HHS R01 AI064046NIAID NIH HHS R37 AI064046NIAID NIH HHS R56 AI064046NIGMS NIH HHS R35 GM118047
6 · The paper itself

Abstract

Integration of the reverse-transcribed viral DNA into host chromosomes is a critical step in the life-cycle of retroviruses, including an oncogenic delta(δ)-retrovirus human T-cell leukemia virus type-1 (HTLV-1). Retroviral integrase forms a higher order nucleoprotein assembly (intasome) to catalyze the integration reaction, in which the roles of host factors remain poorly understood. Here, we use cryo-electron microscopy to visualize the HTLV-1 intasome at 3.7-Å resolution. The structure together with functional analyses reveal that the B56γ (B'γ) subunit of an essential host enzyme, protein phosphatase 2 A (PP2A), is repurposed as an integral component of the intasome to mediate HTLV-1 integration. Our studies reveal a key host-virus interaction underlying the replication of an important human pathogen and highlight divergent integration strategies of retroviruses.

Indexed as

Cryoelectron MicroscopyDNA, ViralHEK293 CellsHost-Pathogen InteractionsHumansHuman T-lymphotropic virus 1IntegrasesModels, MolecularPoint MutationProtein BindingProtein Phosphatase 2Viral ProteinsVirus IntegrationDNA, ViralIntegrasesPPP2R5C protein, humanProtein Phosphatase 2Viral Proteins

Identifiers

PMID32561747
PMCPMC7305164
OpenAlexW3035912978

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.