Evidence map›Paper›PMID 32561718›Full record

ArticleNature communications2020

Non-cooperative 4E-BP2 folding with exchange between eIF4E-binding and binding-incompatible states tunes cap-dependent translation inhibition.

Jennifer E Dawson, Alaji Bah, Zhenfu Zhang, Robert M Vernon, Hong Lin, P Andrew Chong, Manasvi Vanama, Nahum Sonenberg, Claudiu C Gradinaru, Julie D Forman-Kay

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. A fine balance of hydrophobic-electrostatic communication pathways in a pH-switching protein.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jennifer E Dawson *Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.ORCID http://orcid.org/0000-0002-8387-6109
Alaji Bah *Program in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.
Zhenfu ZhangDepartment of Chemical and Physical Sciences, University of Toronto, Mississauga, ON, L5L 1C6, Canada.
Robert M VernonProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.
Hong LinProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.
P Andrew ChongProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.ORCID http://orcid.org/0000-0003-4416-0631
Manasvi VanamaProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada.
Nahum SonenbergDepartment of Biochemistry, McGill University, Montreal, QC, H3G 1Y6, Canada.
Claudiu C GradinaruDepartment of Chemical and Physical Sciences, University of Toronto, Mississauga, ON, L5L 1C6, Canada.ORCID http://orcid.org/0000-0002-1897-313X
Julie D Forman-KayProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, ON, M5G 0A4, Canada. forman@sickkids.ca.ORCID http://orcid.org/0000-0001-8265-972X
Hospital for Sick Children · CAUniversity of Toronto · CAMcGill University Health Centre · CASUNY Upstate Medical University · US

Funding

Role of DNA Methylation in Liquid-liquid Phase Separation-mediated Heterochromatin FormationR35GM138097 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI BAH, ALAJI · 2020 to 2024
$2.2M
CIHR MOP-119579NIGMS NIH HHS R35 GM138097
6 · The paper itself

Abstract

Phosphorylation of intrinsically disordered eIF4E binding proteins (4E-BPs) regulates cap-dependent translation by weakening their ability to compete with eIF4G for eIF4E binding within the translation initiation complex. We previously showed that phosphorylation of T37 and T46 in 4E-BP2 induces folding of a four-stranded beta-fold domain, partially sequestering the canonical eIF4E-binding helix. The C-terminal intrinsically disordered region (C-IDR), remaining disordered after phosphorylation, contains the secondary eIF4E-binding site and three other phospho-sites, whose mechanisms in inhibiting binding are not understood. Here we report that the domain is non-cooperatively folded, with exchange between beta strands and helical conformations. C-IDR phosphorylation shifts the conformational equilibrium, controlling access to eIF4E binding sites. The hairpin turns formed by pT37/pT46 are remarkably stable and function as transplantable units for phospho-regulation of stability. These results demonstrate how non-cooperative folding and conformational exchange leads to graded inhibition of 4E-BP2:eIF4E binding, shifting 4E-BP2 into an eIF4E binding-incompatible conformation and regulating translation initiation.

Indexed as

Computational BiologyEukaryotic Initiation Factor-4EIntrinsically Disordered ProteinsMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularPhosphorylationProtein BindingProtein BiosynthesisProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein FoldingProtein Processing, Post-TranslationalRNA CapsEukaryotic Initiation Factor-4EIntrinsically Disordered ProteinsRNA Caps

Identifiers

PMID32561718
PMCPMC7305185
OpenAlexW3036292274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.